Hb_000207_330

Information

Type transcription factor
Description TF Family: C2H2
Location Contig207: 431030-432505
Sequence    

Annotation

kegg
ID vvi:100248677
description protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
nr
ID XP_012081095.1
description PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1 [Jatropha curcas]
swissprot
ID Q9C8N5
description Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 OS=Arabidopsis thaliana GN=STOP1 PE=2 SV=1
trembl
ID A0A067K5K7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17163 PE=4 SV=1
Gene Ontology
ID GO:0003676
description protein sensitive to proton rhizotoxicity 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21335: 430206-432692
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000207_330 0.0 transcription factor TF Family: C2H2 PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1 [Jatropha curcas]
2 Hb_000768_200 0.0674270262 - - hypothetical protein POPTR_0013s06910g [Populus trichocarpa]
3 Hb_065525_040 0.0684625309 transcription factor TF Family: ERF ethylene-responsive transcription factor 3-like [Jatropha curcas]
4 Hb_004672_040 0.0705795201 - - PREDICTED: SEC1 family transport protein SLY1-like [Populus euphratica]
5 Hb_006478_020 0.0710346618 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
6 Hb_000665_060 0.0774862108 - - PREDICTED: trafficking protein particle complex II-specific subunit 120 homolog [Jatropha curcas]
7 Hb_005054_110 0.0775567859 - - PREDICTED: adenylosuccinate lyase-like [Jatropha curcas]
8 Hb_000116_270 0.0835782542 - - PREDICTED: SRSF protein kinase 2-like [Jatropha curcas]
9 Hb_003025_100 0.0837873912 - - PREDICTED: serine/threonine-protein phosphatase 5 isoform X2 [Jatropha curcas]
10 Hb_001163_100 0.0841877973 - - serine/threonine protein kinase, putative [Ricinus communis]
11 Hb_000172_290 0.0842422543 - - PREDICTED: trafficking protein particle complex subunit 12 [Jatropha curcas]
12 Hb_000340_230 0.0843125284 - - synapse-associated protein, putative [Ricinus communis]
13 Hb_001818_100 0.0867756557 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
14 Hb_001971_010 0.0877891054 - - F23N19.4 [Arabidopsis thaliana]
15 Hb_029510_050 0.0878539608 - - PREDICTED: golgin candidate 5 [Jatropha curcas]
16 Hb_001016_120 0.0880536516 - - PREDICTED: 3-dehydroquinate synthase, chloroplastic [Jatropha curcas]
17 Hb_011386_010 0.0881231902 - - mitochondrial carrier protein, putative [Ricinus communis]
18 Hb_027380_130 0.0892654941 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 23 isoform X2 [Jatropha curcas]
19 Hb_001227_060 0.090171817 - - PREDICTED: pentatricopeptide repeat-containing protein At4g20740 [Jatropha curcas]
20 Hb_149985_010 0.0903112383 - - PREDICTED: transcription initiation factor IIB-2 [Cucumis sativus]

Gene co-expression network

sample Hb_000207_330 Hb_000207_330 Hb_000768_200 Hb_000768_200 Hb_000207_330--Hb_000768_200 Hb_065525_040 Hb_065525_040 Hb_000207_330--Hb_065525_040 Hb_004672_040 Hb_004672_040 Hb_000207_330--Hb_004672_040 Hb_006478_020 Hb_006478_020 Hb_000207_330--Hb_006478_020 Hb_000665_060 Hb_000665_060 Hb_000207_330--Hb_000665_060 Hb_005054_110 Hb_005054_110 Hb_000207_330--Hb_005054_110 Hb_002046_160 Hb_002046_160 Hb_000768_200--Hb_002046_160 Hb_001818_100 Hb_001818_100 Hb_000768_200--Hb_001818_100 Hb_009780_030 Hb_009780_030 Hb_000768_200--Hb_009780_030 Hb_001766_050 Hb_001766_050 Hb_000768_200--Hb_001766_050 Hb_003025_100 Hb_003025_100 Hb_000768_200--Hb_003025_100 Hb_000732_010 Hb_000732_010 Hb_065525_040--Hb_000732_010 Hb_002754_010 Hb_002754_010 Hb_065525_040--Hb_002754_010 Hb_065525_040--Hb_005054_110 Hb_000331_550 Hb_000331_550 Hb_065525_040--Hb_000331_550 Hb_005463_100 Hb_005463_100 Hb_065525_040--Hb_005463_100 Hb_000069_310 Hb_000069_310 Hb_065525_040--Hb_000069_310 Hb_001163_100 Hb_001163_100 Hb_004672_040--Hb_001163_100 Hb_000050_190 Hb_000050_190 Hb_004672_040--Hb_000050_190 Hb_003168_110 Hb_003168_110 Hb_004672_040--Hb_003168_110 Hb_000192_080 Hb_000192_080 Hb_004672_040--Hb_000192_080 Hb_006915_030 Hb_006915_030 Hb_004672_040--Hb_006915_030 Hb_000116_270 Hb_000116_270 Hb_006478_020--Hb_000116_270 Hb_000599_250 Hb_000599_250 Hb_006478_020--Hb_000599_250 Hb_006478_020--Hb_003025_100 Hb_000172_290 Hb_000172_290 Hb_006478_020--Hb_000172_290 Hb_001971_010 Hb_001971_010 Hb_006478_020--Hb_001971_010 Hb_001366_180 Hb_001366_180 Hb_006478_020--Hb_001366_180 Hb_000174_180 Hb_000174_180 Hb_000665_060--Hb_000174_180 Hb_000156_010 Hb_000156_010 Hb_000665_060--Hb_000156_010 Hb_000254_090 Hb_000254_090 Hb_000665_060--Hb_000254_090 Hb_000665_060--Hb_000192_080 Hb_009218_010 Hb_009218_010 Hb_000665_060--Hb_009218_010 Hb_000009_560 Hb_000009_560 Hb_000665_060--Hb_000009_560 Hb_011386_010 Hb_011386_010 Hb_005054_110--Hb_011386_010 Hb_000049_210 Hb_000049_210 Hb_005054_110--Hb_000049_210 Hb_000260_350 Hb_000260_350 Hb_005054_110--Hb_000260_350 Hb_149985_010 Hb_149985_010 Hb_005054_110--Hb_149985_010 Hb_019863_070 Hb_019863_070 Hb_005054_110--Hb_019863_070 Hb_001304_110 Hb_001304_110 Hb_005054_110--Hb_001304_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
57.1177 37.0625 33.2353 57.3395 25.5212 50.6454
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
48.0407 49.3332 65.4186 45.6382 60.3336

CAGE analysis