Hb_000172_290

Information

Type -
Description -
Location Contig172: 330172-331422
Sequence    

Annotation

kegg
ID rcu:RCOM_0984660
description d-alanyl-d-alanine carboxypeptidase, putative
nr
ID XP_012093242.1
description PREDICTED: trafficking protein particle complex subunit 12 [Jatropha curcas]
swissprot
ID Q8WVT3
description Trafficking protein particle complex subunit 12 OS=Homo sapiens GN=TRAPPC12 PE=1 SV=3
trembl
ID A0A067LQM4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24093 PE=4 SV=1
Gene Ontology
ID GO:0004180
description trafficking protein particle complex subunit 12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000172_290 0.0 - - PREDICTED: trafficking protein particle complex subunit 12 [Jatropha curcas]
2 Hb_054865_150 0.0564649621 - - PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Jatropha curcas]
3 Hb_000254_090 0.0633426699 - - PREDICTED: la protein 2 [Jatropha curcas]
4 Hb_026198_070 0.064996955 - - PREDICTED: uncharacterized membrane protein At4g09580 [Jatropha curcas]
5 Hb_002685_210 0.0656194238 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 isoform X1 [Jatropha curcas]
6 Hb_006478_020 0.0683836988 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
7 Hb_001971_010 0.0687198628 - - F23N19.4 [Arabidopsis thaliana]
8 Hb_000749_220 0.0692876766 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X1 [Jatropha curcas]
9 Hb_029510_050 0.0695410096 - - PREDICTED: golgin candidate 5 [Jatropha curcas]
10 Hb_005490_030 0.0707008283 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 2 isoform X3 [Jatropha curcas]
11 Hb_003177_030 0.0712130616 - - PREDICTED: uncharacterized protein LOC105635357 [Jatropha curcas]
12 Hb_011037_030 0.0712339461 - - PREDICTED: uncharacterized protein LOC105641407 [Jatropha curcas]
13 Hb_001198_100 0.0730337595 - - PREDICTED: serine hydroxymethyltransferase 7-like [Jatropha curcas]
14 Hb_002110_190 0.0737905218 - - PREDICTED: pentatricopeptide repeat-containing protein At5g27460 [Jatropha curcas]
15 Hb_000477_060 0.0742111876 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
16 Hb_000156_010 0.0754790087 - - phospho-n-acetylmuramoyl-pentapeptide-transferase, putative [Ricinus communis]
17 Hb_007479_040 0.0757254732 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000976_410 0.0762038465 transcription factor TF Family: EIL ETHYLENE-INSENSITIVE3 protein, putative [Ricinus communis]
19 Hb_000331_260 0.0764332773 - - PREDICTED: WD repeat-containing protein 74 isoform X2 [Jatropha curcas]
20 Hb_002740_180 0.0765259964 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000172_290 Hb_000172_290 Hb_054865_150 Hb_054865_150 Hb_000172_290--Hb_054865_150 Hb_000254_090 Hb_000254_090 Hb_000172_290--Hb_000254_090 Hb_026198_070 Hb_026198_070 Hb_000172_290--Hb_026198_070 Hb_002685_210 Hb_002685_210 Hb_000172_290--Hb_002685_210 Hb_006478_020 Hb_006478_020 Hb_000172_290--Hb_006478_020 Hb_001971_010 Hb_001971_010 Hb_000172_290--Hb_001971_010 Hb_011037_030 Hb_011037_030 Hb_054865_150--Hb_011037_030 Hb_000156_010 Hb_000156_010 Hb_054865_150--Hb_000156_010 Hb_054865_150--Hb_000254_090 Hb_000318_290 Hb_000318_290 Hb_054865_150--Hb_000318_290 Hb_002110_190 Hb_002110_190 Hb_054865_150--Hb_002110_190 Hb_029879_070 Hb_029879_070 Hb_000254_090--Hb_029879_070 Hb_000254_090--Hb_026198_070 Hb_029510_050 Hb_029510_050 Hb_000254_090--Hb_029510_050 Hb_000254_090--Hb_000156_010 Hb_000441_200 Hb_000441_200 Hb_026198_070--Hb_000441_200 Hb_026198_070--Hb_002110_190 Hb_000640_170 Hb_000640_170 Hb_026198_070--Hb_000640_170 Hb_002044_150 Hb_002044_150 Hb_026198_070--Hb_002044_150 Hb_007479_040 Hb_007479_040 Hb_026198_070--Hb_007479_040 Hb_002685_210--Hb_029510_050 Hb_002685_210--Hb_029879_070 Hb_005490_030 Hb_005490_030 Hb_002685_210--Hb_005490_030 Hb_002685_210--Hb_000254_090 Hb_000631_080 Hb_000631_080 Hb_002685_210--Hb_000631_080 Hb_000116_270 Hb_000116_270 Hb_006478_020--Hb_000116_270 Hb_000599_250 Hb_000599_250 Hb_006478_020--Hb_000599_250 Hb_003025_100 Hb_003025_100 Hb_006478_020--Hb_003025_100 Hb_006478_020--Hb_001971_010 Hb_001366_180 Hb_001366_180 Hb_006478_020--Hb_001366_180 Hb_001252_130 Hb_001252_130 Hb_001971_010--Hb_001252_130 Hb_000331_260 Hb_000331_260 Hb_001971_010--Hb_000331_260 Hb_002235_250 Hb_002235_250 Hb_001971_010--Hb_002235_250 Hb_002600_090 Hb_002600_090 Hb_001971_010--Hb_002600_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.7296 8.34704 8.08208 17.0198 12.408 19.5284
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.7979 15.4583 19.7015 13.7371 15.8116

CAGE analysis