Hb_002110_190

Information

Type -
Description -
Location Contig2110: 149765-152724
Sequence    

Annotation

kegg
ID rcu:RCOM_1038390
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012067946.1
description PREDICTED: pentatricopeptide repeat-containing protein At5g27460 [Jatropha curcas]
swissprot
ID Q3E911
description Pentatricopeptide repeat-containing protein At5g27460 OS=Arabidopsis thaliana GN=At5g27460 PE=2 SV=1
trembl
ID A0A067KZ41
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15849 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21868: 149879-150170 , PASA_asmbl_21870: 151705-151896 , PASA_asmbl_21871: 152346-152870
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002110_190 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At5g27460 [Jatropha curcas]
2 Hb_007479_040 0.0456443817 - - conserved hypothetical protein [Ricinus communis]
3 Hb_004567_090 0.0566886542 - - PREDICTED: GPI transamidase component PIG-T [Jatropha curcas]
4 Hb_011037_030 0.0574586575 - - PREDICTED: uncharacterized protein LOC105641407 [Jatropha curcas]
5 Hb_026198_070 0.0585711888 - - PREDICTED: uncharacterized membrane protein At4g09580 [Jatropha curcas]
6 Hb_054865_150 0.059582057 - - PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Jatropha curcas]
7 Hb_003680_120 0.0607250828 - - PREDICTED: E3 ubiquitin-protein ligase UPL7 [Jatropha curcas]
8 Hb_000260_350 0.0607469039 - - conserved hypothetical protein [Ricinus communis]
9 Hb_022115_020 0.0609655791 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11 isoform X2 [Jatropha curcas]
10 Hb_006831_140 0.0614210521 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
11 Hb_002213_070 0.0621629173 - - epsilon-adaptin family protein [Populus trichocarpa]
12 Hb_004324_130 0.0622290209 - - polypyrimidine tract binding protein, putative [Ricinus communis]
13 Hb_007638_030 0.0630821487 - - PREDICTED: phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN [Jatropha curcas]
14 Hb_000708_030 0.0648303795 - - PREDICTED: uncharacterized protein LOC105650742 [Jatropha curcas]
15 Hb_000138_100 0.066349431 - - bifunctional purine biosynthesis protein, putative [Ricinus communis]
16 Hb_000181_400 0.0665363277 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 25 isoform X2 [Jatropha curcas]
17 Hb_000003_590 0.0667375304 - - PREDICTED: uncharacterized protein LOC105631550 isoform X2 [Jatropha curcas]
18 Hb_001571_050 0.0682972357 - - PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3-like [Populus euphratica]
19 Hb_002078_350 0.0689736363 - - hypothetical protein B456_005G166600 [Gossypium raimondii]
20 Hb_012498_010 0.0689953976 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM44-2 [Jatropha curcas]

Gene co-expression network

sample Hb_002110_190 Hb_002110_190 Hb_007479_040 Hb_007479_040 Hb_002110_190--Hb_007479_040 Hb_004567_090 Hb_004567_090 Hb_002110_190--Hb_004567_090 Hb_011037_030 Hb_011037_030 Hb_002110_190--Hb_011037_030 Hb_026198_070 Hb_026198_070 Hb_002110_190--Hb_026198_070 Hb_054865_150 Hb_054865_150 Hb_002110_190--Hb_054865_150 Hb_003680_120 Hb_003680_120 Hb_002110_190--Hb_003680_120 Hb_000028_480 Hb_000028_480 Hb_007479_040--Hb_000028_480 Hb_002044_150 Hb_002044_150 Hb_007479_040--Hb_002044_150 Hb_007479_040--Hb_004567_090 Hb_002518_260 Hb_002518_260 Hb_007479_040--Hb_002518_260 Hb_004254_090 Hb_004254_090 Hb_007479_040--Hb_004254_090 Hb_004109_080 Hb_004109_080 Hb_004567_090--Hb_004109_080 Hb_012498_010 Hb_012498_010 Hb_004567_090--Hb_012498_010 Hb_003411_040 Hb_003411_040 Hb_004567_090--Hb_003411_040 Hb_004567_090--Hb_054865_150 Hb_000156_010 Hb_000156_010 Hb_011037_030--Hb_000156_010 Hb_006455_120 Hb_006455_120 Hb_011037_030--Hb_006455_120 Hb_011037_030--Hb_054865_150 Hb_000345_380 Hb_000345_380 Hb_011037_030--Hb_000345_380 Hb_105328_020 Hb_105328_020 Hb_011037_030--Hb_105328_020 Hb_003750_050 Hb_003750_050 Hb_011037_030--Hb_003750_050 Hb_000441_200 Hb_000441_200 Hb_026198_070--Hb_000441_200 Hb_000254_090 Hb_000254_090 Hb_026198_070--Hb_000254_090 Hb_000640_170 Hb_000640_170 Hb_026198_070--Hb_000640_170 Hb_026198_070--Hb_002044_150 Hb_026198_070--Hb_007479_040 Hb_054865_150--Hb_000156_010 Hb_000172_290 Hb_000172_290 Hb_054865_150--Hb_000172_290 Hb_054865_150--Hb_000254_090 Hb_000318_290 Hb_000318_290 Hb_054865_150--Hb_000318_290 Hb_000327_270 Hb_000327_270 Hb_003680_120--Hb_000327_270 Hb_000708_030 Hb_000708_030 Hb_003680_120--Hb_000708_030 Hb_000665_100 Hb_000665_100 Hb_003680_120--Hb_000665_100 Hb_003680_120--Hb_011037_030 Hb_005730_040 Hb_005730_040 Hb_003680_120--Hb_005730_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.63263 2.94422 2.32213 4.22628 3.20601 3.90577
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.06904 3.39018 3.67044 3.89603 3.41533

CAGE analysis