Hb_000665_100

Information

Type -
Description -
Location Contig665: 82238-95996
Sequence    

Annotation

kegg
ID rcu:RCOM_0922730
description hypothetical protein
nr
ID XP_012076479.1
description PREDICTED: neurochondrin [Jatropha curcas]
swissprot
ID Q640K1
description Neurochondrin OS=Xenopus laevis GN=ncdn PE=2 SV=1
trembl
ID A0A067KMM9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07121 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53189: 82331-94972 , PASA_asmbl_53190: 87273-95016 , PASA_asmbl_53191: 90122-94842 , PASA_asmbl_53192: 94877-95970
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000665_100 0.0 - - PREDICTED: neurochondrin [Jatropha curcas]
2 Hb_003680_120 0.0601485896 - - PREDICTED: E3 ubiquitin-protein ligase UPL7 [Jatropha curcas]
3 Hb_007479_040 0.0641163382 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003938_120 0.0722705305 - - autophagy 9 family protein, partial [Populus trichocarpa]
5 Hb_002110_190 0.0729491325 - - PREDICTED: pentatricopeptide repeat-containing protein At5g27460 [Jatropha curcas]
6 Hb_000318_250 0.0748493478 - - PREDICTED: uncharacterized protein LOC105634251 [Jatropha curcas]
7 Hb_000028_480 0.0750411202 - - PREDICTED: putative 3,4-dihydroxy-2-butanone kinase [Jatropha curcas]
8 Hb_002078_350 0.0766971714 - - hypothetical protein B456_005G166600 [Gossypium raimondii]
9 Hb_000708_030 0.07738019 - - PREDICTED: uncharacterized protein LOC105650742 [Jatropha curcas]
10 Hb_001304_110 0.0782423188 transcription factor TF Family: WRKY WRKY protein [Hevea brasiliensis]
11 Hb_005054_090 0.0786923258 - - PREDICTED: uncharacterized protein At2g39910 isoform X1 [Jatropha curcas]
12 Hb_000003_590 0.079495526 - - PREDICTED: uncharacterized protein LOC105631550 isoform X2 [Jatropha curcas]
13 Hb_011386_010 0.0795708409 - - mitochondrial carrier protein, putative [Ricinus communis]
14 Hb_002518_260 0.0800928895 - - PREDICTED: zinc finger CCCH domain-containing protein 40-like [Jatropha curcas]
15 Hb_000130_410 0.0812684854 - - PREDICTED: uncharacterized protein LOC105635730 [Jatropha curcas]
16 Hb_000792_010 0.0820519853 - - PREDICTED: mRNA-capping enzyme [Jatropha curcas]
17 Hb_000146_070 0.0826865461 - - PREDICTED: RNA pseudouridine synthase 4, mitochondrial [Jatropha curcas]
18 Hb_000035_180 0.0836880232 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 4 [Jatropha curcas]
19 Hb_011037_030 0.0842696689 - - PREDICTED: uncharacterized protein LOC105641407 [Jatropha curcas]
20 Hb_054865_150 0.0842766501 - - PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Jatropha curcas]

Gene co-expression network

sample Hb_000665_100 Hb_000665_100 Hb_003680_120 Hb_003680_120 Hb_000665_100--Hb_003680_120 Hb_007479_040 Hb_007479_040 Hb_000665_100--Hb_007479_040 Hb_003938_120 Hb_003938_120 Hb_000665_100--Hb_003938_120 Hb_002110_190 Hb_002110_190 Hb_000665_100--Hb_002110_190 Hb_000318_250 Hb_000318_250 Hb_000665_100--Hb_000318_250 Hb_000028_480 Hb_000028_480 Hb_000665_100--Hb_000028_480 Hb_000327_270 Hb_000327_270 Hb_003680_120--Hb_000327_270 Hb_000708_030 Hb_000708_030 Hb_003680_120--Hb_000708_030 Hb_003680_120--Hb_002110_190 Hb_011037_030 Hb_011037_030 Hb_003680_120--Hb_011037_030 Hb_005730_040 Hb_005730_040 Hb_003680_120--Hb_005730_040 Hb_007479_040--Hb_002110_190 Hb_007479_040--Hb_000028_480 Hb_002044_150 Hb_002044_150 Hb_007479_040--Hb_002044_150 Hb_004567_090 Hb_004567_090 Hb_007479_040--Hb_004567_090 Hb_002518_260 Hb_002518_260 Hb_007479_040--Hb_002518_260 Hb_004254_090 Hb_004254_090 Hb_007479_040--Hb_004254_090 Hb_003938_120--Hb_007479_040 Hb_001304_110 Hb_001304_110 Hb_003938_120--Hb_001304_110 Hb_003938_120--Hb_000028_480 Hb_005054_090 Hb_005054_090 Hb_003938_120--Hb_005054_090 Hb_003938_120--Hb_004567_090 Hb_002110_190--Hb_004567_090 Hb_002110_190--Hb_011037_030 Hb_026198_070 Hb_026198_070 Hb_002110_190--Hb_026198_070 Hb_054865_150 Hb_054865_150 Hb_002110_190--Hb_054865_150 Hb_001546_080 Hb_001546_080 Hb_000318_250--Hb_001546_080 Hb_000130_410 Hb_000130_410 Hb_000318_250--Hb_000130_410 Hb_000868_090 Hb_000868_090 Hb_000318_250--Hb_000868_090 Hb_000732_010 Hb_000732_010 Hb_000318_250--Hb_000732_010 Hb_000317_050 Hb_000317_050 Hb_000318_250--Hb_000317_050 Hb_000329_710 Hb_000329_710 Hb_000318_250--Hb_000329_710 Hb_000028_480--Hb_002518_260 Hb_000792_010 Hb_000792_010 Hb_000028_480--Hb_000792_010 Hb_001198_100 Hb_001198_100 Hb_000028_480--Hb_001198_100 Hb_000976_300 Hb_000976_300 Hb_000028_480--Hb_000976_300 Hb_028912_050 Hb_028912_050 Hb_000028_480--Hb_028912_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.74438 8.54774 6.88632 7.5712 8.25333 11.3802
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.8918 8.73259 9.00593 7.83886 9.46054

CAGE analysis