Hb_001546_080

Information

Type -
Description -
Location Contig1546: 51433-58958
Sequence    

Annotation

kegg
ID rcu:RCOM_0653050
description protein with unknown function
nr
ID XP_012068890.1
description PREDICTED: transcription initiation factor TFIID subunit 12b isoform X1 [Jatropha curcas]
swissprot
ID B2C6R6
description Transcription initiation factor TFIID subunit 12b OS=Arabidopsis thaliana GN=TAF12B PE=1 SV=1
trembl
ID A0A067L9H2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24708 PE=4 SV=1
Gene Ontology
ID GO:0005669
description transcription initiation factor tfiid subunit 12b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13395: 51751-58916
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001546_080 0.0 - - PREDICTED: transcription initiation factor TFIID subunit 12b isoform X1 [Jatropha curcas]
2 Hb_000318_250 0.0245193639 - - PREDICTED: uncharacterized protein LOC105634251 [Jatropha curcas]
3 Hb_000317_050 0.0631528066 - - formiminotransferase-cyclodeaminase, putative [Ricinus communis]
4 Hb_003030_060 0.0647791597 - - PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 2-like [Jatropha curcas]
5 Hb_000329_710 0.0678100121 - - PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1 isoform X1 [Jatropha curcas]
6 Hb_006478_040 0.0695033326 - - PREDICTED: methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial [Jatropha curcas]
7 Hb_005489_020 0.0720204332 - - conserved hypothetical protein [Ricinus communis]
8 Hb_008959_020 0.0728111938 - - PREDICTED: nitric oxide synthase-interacting protein [Pyrus x bretschneideri]
9 Hb_001329_160 0.0735677203 - - PREDICTED: uncharacterized protein LOC105642679 isoform X1 [Jatropha curcas]
10 Hb_000130_410 0.0739284788 - - PREDICTED: uncharacterized protein LOC105635730 [Jatropha curcas]
11 Hb_002890_290 0.0755356437 - - PREDICTED: outer envelope protein 64, mitochondrial [Jatropha curcas]
12 Hb_167498_010 0.0787036404 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
13 Hb_001080_230 0.0790831295 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105649979 [Jatropha curcas]
14 Hb_000003_190 0.0805944813 transcription factor TF Family: MYB-related PREDICTED: transcription factor DIVARICATA-like isoform X1 [Nelumbo nucifera]
15 Hb_001004_060 0.0811693533 - - PREDICTED: uncharacterized protein LOC105630220 isoform X4 [Jatropha curcas]
16 Hb_001470_030 0.081550577 - - PREDICTED: MORC family CW-type zinc finger protein 3 isoform X2 [Jatropha curcas]
17 Hb_000868_090 0.081625901 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 4 [Jatropha curcas]
18 Hb_000976_310 0.081650602 - - PREDICTED: protein EMSY-LIKE 3 isoform X1 [Jatropha curcas]
19 Hb_007590_020 0.0824059875 - - PREDICTED: protein DAMAGED DNA-BINDING 2 [Jatropha curcas]
20 Hb_000395_130 0.0826011361 - - PREDICTED: N6-adenosine-methyltransferase MT-A70-like [Jatropha curcas]

Gene co-expression network

sample Hb_001546_080 Hb_001546_080 Hb_000318_250 Hb_000318_250 Hb_001546_080--Hb_000318_250 Hb_000317_050 Hb_000317_050 Hb_001546_080--Hb_000317_050 Hb_003030_060 Hb_003030_060 Hb_001546_080--Hb_003030_060 Hb_000329_710 Hb_000329_710 Hb_001546_080--Hb_000329_710 Hb_006478_040 Hb_006478_040 Hb_001546_080--Hb_006478_040 Hb_005489_020 Hb_005489_020 Hb_001546_080--Hb_005489_020 Hb_000130_410 Hb_000130_410 Hb_000318_250--Hb_000130_410 Hb_000868_090 Hb_000868_090 Hb_000318_250--Hb_000868_090 Hb_000732_010 Hb_000732_010 Hb_000318_250--Hb_000732_010 Hb_000318_250--Hb_000317_050 Hb_000318_250--Hb_000329_710 Hb_002592_060 Hb_002592_060 Hb_000317_050--Hb_002592_060 Hb_001307_220 Hb_001307_220 Hb_000317_050--Hb_001307_220 Hb_000317_050--Hb_000329_710 Hb_002263_020 Hb_002263_020 Hb_000317_050--Hb_002263_020 Hb_010712_050 Hb_010712_050 Hb_003030_060--Hb_010712_050 Hb_001225_040 Hb_001225_040 Hb_003030_060--Hb_001225_040 Hb_004837_180 Hb_004837_180 Hb_003030_060--Hb_004837_180 Hb_001080_230 Hb_001080_230 Hb_003030_060--Hb_001080_230 Hb_012194_030 Hb_012194_030 Hb_003030_060--Hb_012194_030 Hb_000792_010 Hb_000792_010 Hb_000329_710--Hb_000792_010 Hb_011386_010 Hb_011386_010 Hb_000329_710--Hb_011386_010 Hb_001004_060 Hb_001004_060 Hb_000329_710--Hb_001004_060 Hb_002518_260 Hb_002518_260 Hb_000329_710--Hb_002518_260 Hb_009486_140 Hb_009486_140 Hb_000329_710--Hb_009486_140 Hb_000041_110 Hb_000041_110 Hb_000329_710--Hb_000041_110 Hb_000340_400 Hb_000340_400 Hb_006478_040--Hb_000340_400 Hb_006478_040--Hb_003030_060 Hb_006478_040--Hb_000318_250 Hb_005116_060 Hb_005116_060 Hb_006478_040--Hb_005116_060 Hb_001470_030 Hb_001470_030 Hb_006478_040--Hb_001470_030 Hb_005779_080 Hb_005779_080 Hb_005489_020--Hb_005779_080 Hb_000329_370 Hb_000329_370 Hb_005489_020--Hb_000329_370 Hb_001227_030 Hb_001227_030 Hb_005489_020--Hb_001227_030 Hb_021443_040 Hb_021443_040 Hb_005489_020--Hb_021443_040 Hb_002890_290 Hb_002890_290 Hb_005489_020--Hb_002890_290 Hb_003929_280 Hb_003929_280 Hb_005489_020--Hb_003929_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.3664 18.3695 9.61625 8.57994 11.8586 13.6642
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.5705 15.8298 11.1139 11.3978 14.7414

CAGE analysis