Hb_003030_060

Information

Type -
Description -
Location Contig3030: 84533-88341
Sequence    

Annotation

kegg
ID rcu:RCOM_0845430
description hypothetical protein
nr
ID XP_012070337.1
description PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 2-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L6A1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02639 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31967: 51650-88286 , PASA_asmbl_31968: 51668-85710
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003030_060 0.0 - - PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 2-like [Jatropha curcas]
2 Hb_010712_050 0.0527195588 - - PREDICTED: protein ELC-like [Jatropha curcas]
3 Hb_001225_040 0.0628421601 - - PREDICTED: meiosis-specific nuclear structural protein 1 isoform X5 [Jatropha curcas]
4 Hb_004837_180 0.0630215371 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
5 Hb_001080_230 0.063880568 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105649979 [Jatropha curcas]
6 Hb_001546_080 0.0647791597 - - PREDICTED: transcription initiation factor TFIID subunit 12b isoform X1 [Jatropha curcas]
7 Hb_012194_030 0.0673623705 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
8 Hb_003464_090 0.0675536381 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]
9 Hb_012779_090 0.0675977231 - - PREDICTED: lipase member N [Jatropha curcas]
10 Hb_000329_370 0.0676073212 - - hypothetical protein JCGZ_14571 [Jatropha curcas]
11 Hb_005725_210 0.0689939466 - - PREDICTED: RNA-binding protein 1 [Jatropha curcas]
12 Hb_005653_090 0.0690251809 - - PREDICTED: protein HIRA isoform X1 [Jatropha curcas]
13 Hb_162275_050 0.069606817 - - PREDICTED: mRNA-capping enzyme [Jatropha curcas]
14 Hb_011537_050 0.0702787513 - - PREDICTED: protein EMSY-LIKE 3 isoform X1 [Jatropha curcas]
15 Hb_005489_020 0.0718826364 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000331_680 0.0721133543 - - Protein bem46, putative [Ricinus communis]
17 Hb_004236_050 0.0728053051 - - PREDICTED: nipped-B-like protein A [Jatropha curcas]
18 Hb_006478_040 0.0729283804 - - PREDICTED: methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial [Jatropha curcas]
19 Hb_003849_110 0.0732237567 - - hypothetical protein JCGZ_17842 [Jatropha curcas]
20 Hb_000318_250 0.0735240696 - - PREDICTED: uncharacterized protein LOC105634251 [Jatropha curcas]

Gene co-expression network

sample Hb_003030_060 Hb_003030_060 Hb_010712_050 Hb_010712_050 Hb_003030_060--Hb_010712_050 Hb_001225_040 Hb_001225_040 Hb_003030_060--Hb_001225_040 Hb_004837_180 Hb_004837_180 Hb_003030_060--Hb_004837_180 Hb_001080_230 Hb_001080_230 Hb_003030_060--Hb_001080_230 Hb_001546_080 Hb_001546_080 Hb_003030_060--Hb_001546_080 Hb_012194_030 Hb_012194_030 Hb_003030_060--Hb_012194_030 Hb_010712_050--Hb_012194_030 Hb_000329_370 Hb_000329_370 Hb_010712_050--Hb_000329_370 Hb_002234_090 Hb_002234_090 Hb_010712_050--Hb_002234_090 Hb_001614_060 Hb_001614_060 Hb_010712_050--Hb_001614_060 Hb_003835_070 Hb_003835_070 Hb_010712_050--Hb_003835_070 Hb_001225_040--Hb_004837_180 Hb_005653_090 Hb_005653_090 Hb_001225_040--Hb_005653_090 Hb_006520_040 Hb_006520_040 Hb_001225_040--Hb_006520_040 Hb_005730_040 Hb_005730_040 Hb_001225_040--Hb_005730_040 Hb_011537_050 Hb_011537_050 Hb_001225_040--Hb_011537_050 Hb_005867_070 Hb_005867_070 Hb_004837_180--Hb_005867_070 Hb_007590_020 Hb_007590_020 Hb_004837_180--Hb_007590_020 Hb_003929_280 Hb_003929_280 Hb_004837_180--Hb_003929_280 Hb_002217_110 Hb_002217_110 Hb_004837_180--Hb_002217_110 Hb_004236_050 Hb_004236_050 Hb_004837_180--Hb_004236_050 Hb_000003_190 Hb_000003_190 Hb_001080_230--Hb_000003_190 Hb_000092_020 Hb_000092_020 Hb_001080_230--Hb_000092_020 Hb_000395_130 Hb_000395_130 Hb_001080_230--Hb_000395_130 Hb_003470_080 Hb_003470_080 Hb_001080_230--Hb_003470_080 Hb_002872_040 Hb_002872_040 Hb_001080_230--Hb_002872_040 Hb_000318_250 Hb_000318_250 Hb_001546_080--Hb_000318_250 Hb_000317_050 Hb_000317_050 Hb_001546_080--Hb_000317_050 Hb_000329_710 Hb_000329_710 Hb_001546_080--Hb_000329_710 Hb_006478_040 Hb_006478_040 Hb_001546_080--Hb_006478_040 Hb_005489_020 Hb_005489_020 Hb_001546_080--Hb_005489_020 Hb_012194_030--Hb_000329_370 Hb_162275_050 Hb_162275_050 Hb_012194_030--Hb_162275_050 Hb_002085_030 Hb_002085_030 Hb_012194_030--Hb_002085_030 Hb_012194_030--Hb_003835_070 Hb_012779_090 Hb_012779_090 Hb_012194_030--Hb_012779_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.7574 41.8875 24.4401 15.931 19.9312 24.6719
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.8636 25.6423 20.7084 24.7705 25.5004

CAGE analysis