Hb_000003_190

Information

Type transcription factor
Description TF Family: MYB-related
Location Contig3: 113213-118451
Sequence    

Annotation

kegg
ID pop:POPTR_0005s08990g
description POPTRDRAFT_650862; myb family transcription factor family protein
nr
ID XP_010249027.1
description PREDICTED: transcription factor DIVARICATA-like isoform X1 [Nelumbo nucifera]
swissprot
ID Q8S9H7
description Transcription factor DIVARICATA OS=Antirrhinum majus GN=DIVARICATA PE=2 SV=1
trembl
ID A0A067KZR0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24477 PE=4 SV=1
Gene Ontology
ID GO:0005634
description transcription factor divaricata-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31383: 113199-118450 , PASA_asmbl_31384: 114110-114234
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000003_190 0.0 transcription factor TF Family: MYB-related PREDICTED: transcription factor DIVARICATA-like isoform X1 [Nelumbo nucifera]
2 Hb_001080_230 0.0404081052 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105649979 [Jatropha curcas]
3 Hb_000092_020 0.0521079939 transcription factor TF Family: MYB transcription factor, putative [Ricinus communis]
4 Hb_003470_080 0.0535135706 transcription factor TF Family: SNF2 PREDICTED: protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1 [Jatropha curcas]
5 Hb_002872_040 0.0570300973 - - pumilio, putative [Ricinus communis]
6 Hb_000395_130 0.0589744518 - - PREDICTED: N6-adenosine-methyltransferase MT-A70-like [Jatropha curcas]
7 Hb_008959_020 0.0603056285 - - PREDICTED: nitric oxide synthase-interacting protein [Pyrus x bretschneideri]
8 Hb_001638_270 0.0632539552 - - PREDICTED: vacuolar protein sorting-associated protein 8 homolog isoform X2 [Jatropha curcas]
9 Hb_000574_540 0.0674242051 - - ATP binding protein, putative [Ricinus communis]
10 Hb_000170_150 0.0731194344 - - PREDICTED: uncharacterized protein LOC105638996 isoform X3 [Jatropha curcas]
11 Hb_011537_050 0.0731658495 - - PREDICTED: protein EMSY-LIKE 3 isoform X1 [Jatropha curcas]
12 Hb_011491_010 0.07319896 - - Protein YME1, putative [Ricinus communis]
13 Hb_001104_190 0.0736872983 - - PREDICTED: uncharacterized protein LOC105629451 [Jatropha curcas]
14 Hb_001266_100 0.0745501929 - - PREDICTED: uncharacterized protein LOC105649131 [Jatropha curcas]
15 Hb_000243_250 0.0748207281 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 44 [Jatropha curcas]
16 Hb_003370_030 0.0760607114 - - PREDICTED: uncharacterized protein LOC105635547 isoform X2 [Jatropha curcas]
17 Hb_001329_160 0.0770864775 - - PREDICTED: uncharacterized protein LOC105642679 isoform X1 [Jatropha curcas]
18 Hb_000035_290 0.0771211187 - - RNA recognition motif-containing family protein [Populus trichocarpa]
19 Hb_002864_010 0.0781026808 - - PREDICTED: regulator of nonsense transcripts 1 homolog [Jatropha curcas]
20 Hb_002890_290 0.07852254 - - PREDICTED: outer envelope protein 64, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000003_190 Hb_000003_190 Hb_001080_230 Hb_001080_230 Hb_000003_190--Hb_001080_230 Hb_000092_020 Hb_000092_020 Hb_000003_190--Hb_000092_020 Hb_003470_080 Hb_003470_080 Hb_000003_190--Hb_003470_080 Hb_002872_040 Hb_002872_040 Hb_000003_190--Hb_002872_040 Hb_000395_130 Hb_000395_130 Hb_000003_190--Hb_000395_130 Hb_008959_020 Hb_008959_020 Hb_000003_190--Hb_008959_020 Hb_001080_230--Hb_000092_020 Hb_001080_230--Hb_000395_130 Hb_001080_230--Hb_003470_080 Hb_001080_230--Hb_002872_040 Hb_003030_060 Hb_003030_060 Hb_001080_230--Hb_003030_060 Hb_000092_020--Hb_000395_130 Hb_003785_040 Hb_003785_040 Hb_000092_020--Hb_003785_040 Hb_000574_540 Hb_000574_540 Hb_000092_020--Hb_000574_540 Hb_011491_010 Hb_011491_010 Hb_000092_020--Hb_011491_010 Hb_003206_130 Hb_003206_130 Hb_003470_080--Hb_003206_130 Hb_002253_080 Hb_002253_080 Hb_003470_080--Hb_002253_080 Hb_000069_470 Hb_000069_470 Hb_003470_080--Hb_000069_470 Hb_000170_150 Hb_000170_150 Hb_003470_080--Hb_000170_150 Hb_000243_250 Hb_000243_250 Hb_002872_040--Hb_000243_250 Hb_002872_040--Hb_000092_020 Hb_001638_270 Hb_001638_270 Hb_002872_040--Hb_001638_270 Hb_002872_040--Hb_000574_540 Hb_000441_120 Hb_000441_120 Hb_000395_130--Hb_000441_120 Hb_006420_040 Hb_006420_040 Hb_000395_130--Hb_006420_040 Hb_012779_090 Hb_012779_090 Hb_000395_130--Hb_012779_090 Hb_001329_160 Hb_001329_160 Hb_008959_020--Hb_001329_160 Hb_001546_080 Hb_001546_080 Hb_008959_020--Hb_001546_080 Hb_007765_110 Hb_007765_110 Hb_008959_020--Hb_007765_110 Hb_008959_020--Hb_001080_230 Hb_001266_100 Hb_001266_100 Hb_008959_020--Hb_001266_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.73224 12.3726 4.4528 5.19791 8.33575 7.56376
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.0138 7.11675 4.99621 7.21046 7.03694

CAGE analysis