Hb_000170_150

Information

Type -
Description -
Location Contig170: 225997-238612
Sequence    

Annotation

kegg
ID rcu:RCOM_0562140
description hypothetical protein
nr
ID XP_012078320.1
description PREDICTED: uncharacterized protein LOC105638996 isoform X3 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID E6NU79
description JMS09K11.7 protein OS=Jatropha curcas GN=JMS09K11.7 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15879: 229367-230217 , PASA_asmbl_15880: 232162-232637 , PASA_asmbl_15881: 231580-238448
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000170_150 0.0 - - PREDICTED: uncharacterized protein LOC105638996 isoform X3 [Jatropha curcas]
2 Hb_000264_030 0.0546828644 - - PREDICTED: splicing factor 3B subunit 2 [Jatropha curcas]
3 Hb_159558_010 0.0597227486 - - PREDICTED: uncharacterized protein LOC105635846 [Jatropha curcas]
4 Hb_001767_140 0.0612058792 - - PREDICTED: protein-tyrosine-phosphatase MKP1 [Jatropha curcas]
5 Hb_003371_110 0.061958989 - - PREDICTED: protein EMSY-LIKE 3 [Jatropha curcas]
6 Hb_003470_080 0.0632784213 transcription factor TF Family: SNF2 PREDICTED: protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1 [Jatropha curcas]
7 Hb_000289_040 0.065256918 - - Poly(A) polymerase alpha, putative [Ricinus communis]
8 Hb_002253_080 0.0653970622 - - PREDICTED: phosphatidylinositol 4-kinase beta 1-like [Jatropha curcas]
9 Hb_000614_210 0.0657669328 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-1-like isoform X1 [Jatropha curcas]
10 Hb_140049_040 0.0663767366 - - PREDICTED: uncharacterized protein LOC105632012 [Jatropha curcas]
11 Hb_000025_710 0.0664846252 transcription factor TF Family: SNF2 Chromodomain-helicase-DNA-binding 2 [Gossypium arboreum]
12 Hb_001191_120 0.0666987407 - - PREDICTED: cleavage stimulating factor 64 isoform X1 [Jatropha curcas]
13 Hb_013399_070 0.0670067586 - - PREDICTED: uncharacterized protein LOC105631409 isoform X1 [Jatropha curcas]
14 Hb_003943_010 0.0678021978 - - conserved hypothetical protein [Ricinus communis]
15 Hb_005542_140 0.0683619688 - - PREDICTED: U-box domain-containing protein 62-like [Jatropha curcas]
16 Hb_001080_230 0.0684592358 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105649979 [Jatropha curcas]
17 Hb_000914_120 0.068950426 - - PREDICTED: outer envelope protein 80, chloroplastic [Jatropha curcas]
18 Hb_000166_130 0.0701787191 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001946_340 0.070417263 - - PREDICTED: mediator of RNA polymerase II transcription subunit 17-like isoform X1 [Jatropha curcas]
20 Hb_001195_320 0.0718507451 - - PREDICTED: S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase [Jatropha curcas]

Gene co-expression network

sample Hb_000170_150 Hb_000170_150 Hb_000264_030 Hb_000264_030 Hb_000170_150--Hb_000264_030 Hb_159558_010 Hb_159558_010 Hb_000170_150--Hb_159558_010 Hb_001767_140 Hb_001767_140 Hb_000170_150--Hb_001767_140 Hb_003371_110 Hb_003371_110 Hb_000170_150--Hb_003371_110 Hb_003470_080 Hb_003470_080 Hb_000170_150--Hb_003470_080 Hb_000289_040 Hb_000289_040 Hb_000170_150--Hb_000289_040 Hb_000264_030--Hb_003371_110 Hb_000914_120 Hb_000914_120 Hb_000264_030--Hb_000914_120 Hb_001799_050 Hb_001799_050 Hb_000264_030--Hb_001799_050 Hb_000264_030--Hb_000289_040 Hb_140049_040 Hb_140049_040 Hb_000264_030--Hb_140049_040 Hb_000614_210 Hb_000614_210 Hb_159558_010--Hb_000614_210 Hb_005542_140 Hb_005542_140 Hb_159558_010--Hb_005542_140 Hb_001814_030 Hb_001814_030 Hb_159558_010--Hb_001814_030 Hb_000174_060 Hb_000174_060 Hb_159558_010--Hb_000174_060 Hb_003206_130 Hb_003206_130 Hb_159558_010--Hb_003206_130 Hb_009615_170 Hb_009615_170 Hb_159558_010--Hb_009615_170 Hb_008253_030 Hb_008253_030 Hb_001767_140--Hb_008253_030 Hb_002253_080 Hb_002253_080 Hb_001767_140--Hb_002253_080 Hb_002267_140 Hb_002267_140 Hb_001767_140--Hb_002267_140 Hb_001767_140--Hb_140049_040 Hb_001767_140--Hb_000174_060 Hb_003866_080 Hb_003866_080 Hb_001767_140--Hb_003866_080 Hb_014361_070 Hb_014361_070 Hb_003371_110--Hb_014361_070 Hb_001195_320 Hb_001195_320 Hb_003371_110--Hb_001195_320 Hb_000166_130 Hb_000166_130 Hb_003371_110--Hb_000166_130 Hb_002823_030 Hb_002823_030 Hb_003371_110--Hb_002823_030 Hb_000190_120 Hb_000190_120 Hb_003371_110--Hb_000190_120 Hb_004935_030 Hb_004935_030 Hb_003371_110--Hb_004935_030 Hb_000003_190 Hb_000003_190 Hb_003470_080--Hb_000003_190 Hb_003470_080--Hb_003206_130 Hb_003470_080--Hb_002253_080 Hb_001080_230 Hb_001080_230 Hb_003470_080--Hb_001080_230 Hb_000069_470 Hb_000069_470 Hb_003470_080--Hb_000069_470 Hb_002876_130 Hb_002876_130 Hb_000289_040--Hb_002876_130 Hb_000289_040--Hb_140049_040 Hb_000289_040--Hb_014361_070 Hb_000679_310 Hb_000679_310 Hb_000289_040--Hb_000679_310 Hb_001104_160 Hb_001104_160 Hb_000289_040--Hb_001104_160 Hb_000289_040--Hb_000614_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.33182 15.6129 7.37692 7.17668 10.5675 13.2207
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.99595 7.04625 5.93778 9.87419 9.85845

CAGE analysis