Hb_000914_120

Information

Type -
Description -
Location Contig914: 106763-115287
Sequence    

Annotation

kegg
ID rcu:RCOM_1577380
description sorting and assembly machinery (sam50) protein, putative
nr
ID XP_012089973.1
description PREDICTED: outer envelope protein 80, chloroplastic [Jatropha curcas]
swissprot
ID Q9C5J8
description Outer envelope protein 80, chloroplastic OS=Arabidopsis thaliana GN=OEP80 PE=2 SV=1
trembl
ID A0A067JGZ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25904 PE=4 SV=1
Gene Ontology
ID GO:0005739
description outer envelope protein of 80 kda isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62187: 106814-109866 , PASA_asmbl_62188: 109537-109671 , PASA_asmbl_62189: 109870-115023 , PASA_asmbl_62190: 109870-115023
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000914_120 0.0 - - PREDICTED: outer envelope protein 80, chloroplastic [Jatropha curcas]
2 Hb_000230_090 0.0463163406 - - PREDICTED: WD repeat-containing protein 48 isoform X1 [Jatropha curcas]
3 Hb_008695_110 0.0520012017 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105638874 isoform X1 [Jatropha curcas]
4 Hb_000671_070 0.0543482351 - - PREDICTED: uncharacterized protein LOC105630621 [Jatropha curcas]
5 Hb_001268_280 0.0600866545 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000264_030 0.0618589032 - - PREDICTED: splicing factor 3B subunit 2 [Jatropha curcas]
7 Hb_001767_140 0.0629475612 - - PREDICTED: protein-tyrosine-phosphatase MKP1 [Jatropha curcas]
8 Hb_000174_060 0.0639052982 - - zinc finger family protein [Populus trichocarpa]
9 Hb_001191_120 0.0643302849 - - PREDICTED: cleavage stimulating factor 64 isoform X1 [Jatropha curcas]
10 Hb_140049_040 0.0648129022 - - PREDICTED: uncharacterized protein LOC105632012 [Jatropha curcas]
11 Hb_000960_050 0.0649697382 - - PREDICTED: protein EXPORTIN 1A [Jatropha curcas]
12 Hb_003371_110 0.0654626359 - - PREDICTED: protein EMSY-LIKE 3 [Jatropha curcas]
13 Hb_000836_410 0.0656446267 - - sec10, putative [Ricinus communis]
14 Hb_012305_030 0.0664606006 - - hypothetical protein JCGZ_18979 [Jatropha curcas]
15 Hb_000563_130 0.0669526126 - - PREDICTED: WD repeat-containing protein 43 [Jatropha curcas]
16 Hb_027380_140 0.0673761737 - - PREDICTED: uncharacterized protein LOC105634023 isoform X1 [Jatropha curcas]
17 Hb_022256_060 0.0674851536 - - PREDICTED: uncharacterized protein LOC105628137 [Jatropha curcas]
18 Hb_000170_150 0.068950426 - - PREDICTED: uncharacterized protein LOC105638996 isoform X3 [Jatropha curcas]
19 Hb_000243_210 0.0701450381 - - protein with unknown function [Ricinus communis]
20 Hb_000025_320 0.0702090306 - - PREDICTED: pentatricopeptide repeat-containing protein At4g28010 [Jatropha curcas]

Gene co-expression network

sample Hb_000914_120 Hb_000914_120 Hb_000230_090 Hb_000230_090 Hb_000914_120--Hb_000230_090 Hb_008695_110 Hb_008695_110 Hb_000914_120--Hb_008695_110 Hb_000671_070 Hb_000671_070 Hb_000914_120--Hb_000671_070 Hb_001268_280 Hb_001268_280 Hb_000914_120--Hb_001268_280 Hb_000264_030 Hb_000264_030 Hb_000914_120--Hb_000264_030 Hb_001767_140 Hb_001767_140 Hb_000914_120--Hb_001767_140 Hb_000960_050 Hb_000960_050 Hb_000230_090--Hb_000960_050 Hb_000679_340 Hb_000679_340 Hb_000230_090--Hb_000679_340 Hb_140049_040 Hb_140049_040 Hb_000230_090--Hb_140049_040 Hb_000836_410 Hb_000836_410 Hb_000230_090--Hb_000836_410 Hb_000230_090--Hb_008695_110 Hb_000084_250 Hb_000084_250 Hb_008695_110--Hb_000084_250 Hb_138596_010 Hb_138596_010 Hb_008695_110--Hb_138596_010 Hb_022256_060 Hb_022256_060 Hb_008695_110--Hb_022256_060 Hb_000574_440 Hb_000574_440 Hb_008695_110--Hb_000574_440 Hb_001191_120 Hb_001191_120 Hb_000671_070--Hb_001191_120 Hb_000025_320 Hb_000025_320 Hb_000671_070--Hb_000025_320 Hb_000243_210 Hb_000243_210 Hb_000671_070--Hb_000243_210 Hb_089140_050 Hb_089140_050 Hb_000671_070--Hb_089140_050 Hb_006420_040 Hb_006420_040 Hb_000671_070--Hb_006420_040 Hb_002267_140 Hb_002267_140 Hb_001268_280--Hb_002267_140 Hb_000162_030 Hb_000162_030 Hb_001268_280--Hb_000162_030 Hb_001318_070 Hb_001318_070 Hb_001268_280--Hb_001318_070 Hb_002732_040 Hb_002732_040 Hb_001268_280--Hb_002732_040 Hb_001268_280--Hb_000243_210 Hb_000170_150 Hb_000170_150 Hb_000264_030--Hb_000170_150 Hb_003371_110 Hb_003371_110 Hb_000264_030--Hb_003371_110 Hb_001799_050 Hb_001799_050 Hb_000264_030--Hb_001799_050 Hb_000289_040 Hb_000289_040 Hb_000264_030--Hb_000289_040 Hb_000264_030--Hb_140049_040 Hb_008253_030 Hb_008253_030 Hb_001767_140--Hb_008253_030 Hb_002253_080 Hb_002253_080 Hb_001767_140--Hb_002253_080 Hb_001767_140--Hb_002267_140 Hb_001767_140--Hb_140049_040 Hb_000174_060 Hb_000174_060 Hb_001767_140--Hb_000174_060 Hb_003866_080 Hb_003866_080 Hb_001767_140--Hb_003866_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.4219 17.353 14.299 9.55565 17.2849 19.5918
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.79933 9.71851 9.58028 13.5284 14.5747

CAGE analysis