Hb_001191_120

Information

Type -
Description -
Location Contig1191: 119630-130082
Sequence    

Annotation

kegg
ID rcu:RCOM_0297330
description mRNA splicing factor, putative
nr
ID XP_012089890.1
description PREDICTED: cleavage stimulating factor 64 isoform X1 [Jatropha curcas]
swissprot
ID Q9M9G6
description Cleavage stimulating factor 64 OS=Arabidopsis thaliana GN=CSTF64 PE=1 SV=1
trembl
ID A0A067JIV2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01932 PE=4 SV=1
Gene Ontology
ID GO:0000166
description cleavage stimulation factor subunit 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05650: 118493-118644 , PASA_asmbl_05651: 118794-118928 , PASA_asmbl_05652: 126620-130135
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001191_120 0.0 - - PREDICTED: cleavage stimulating factor 64 isoform X1 [Jatropha curcas]
2 Hb_000671_070 0.0447954388 - - PREDICTED: uncharacterized protein LOC105630621 [Jatropha curcas]
3 Hb_000025_320 0.0483540456 - - PREDICTED: pentatricopeptide repeat-containing protein At4g28010 [Jatropha curcas]
4 Hb_002350_010 0.0527834523 - - PREDICTED: DNA-directed RNA polymerase III subunit rpc1 [Jatropha curcas]
5 Hb_000025_710 0.0616783509 transcription factor TF Family: SNF2 Chromodomain-helicase-DNA-binding 2 [Gossypium arboreum]
6 Hb_000243_210 0.0640084662 - - protein with unknown function [Ricinus communis]
7 Hb_000914_120 0.0643302849 - - PREDICTED: outer envelope protein 80, chloroplastic [Jatropha curcas]
8 Hb_000329_370 0.0664079901 - - hypothetical protein JCGZ_14571 [Jatropha curcas]
9 Hb_000099_040 0.0664476028 - - unnamed protein product [Coffea canephora]
10 Hb_000170_150 0.0666987407 - - PREDICTED: uncharacterized protein LOC105638996 isoform X3 [Jatropha curcas]
11 Hb_004108_100 0.0678131751 - - PREDICTED: mediator of RNA polymerase II transcription subunit 33B isoform X2 [Jatropha curcas]
12 Hb_002174_030 0.0684418713 - - transcription elongation factor s-II, putative [Ricinus communis]
13 Hb_000176_100 0.0714801698 - - PREDICTED: probable splicing factor 3A subunit 1 [Solanum lycopersicum]
14 Hb_001318_070 0.0720022774 transcription factor TF Family: SBP conserved hypothetical protein [Ricinus communis]
15 Hb_002784_010 0.0727242203 - - DNA-directed RNA polymerase I subunit, putative [Ricinus communis]
16 Hb_008024_030 0.0736523666 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105648348 [Jatropha curcas]
17 Hb_005402_040 0.0737527673 - - PREDICTED: replication factor C subunit 1 [Jatropha curcas]
18 Hb_006420_040 0.0739897876 transcription factor TF Family: Orphans PREDICTED: paired amphipathic helix protein Sin3-like 4 isoform X2 [Jatropha curcas]
19 Hb_000265_230 0.0746162939 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105643603 isoform X1 [Jatropha curcas]
20 Hb_000236_470 0.0759194887 - - PREDICTED: pentatricopeptide repeat-containing protein At5g55840 [Jatropha curcas]

Gene co-expression network

sample Hb_001191_120 Hb_001191_120 Hb_000671_070 Hb_000671_070 Hb_001191_120--Hb_000671_070 Hb_000025_320 Hb_000025_320 Hb_001191_120--Hb_000025_320 Hb_002350_010 Hb_002350_010 Hb_001191_120--Hb_002350_010 Hb_000025_710 Hb_000025_710 Hb_001191_120--Hb_000025_710 Hb_000243_210 Hb_000243_210 Hb_001191_120--Hb_000243_210 Hb_000914_120 Hb_000914_120 Hb_001191_120--Hb_000914_120 Hb_000671_070--Hb_000025_320 Hb_000671_070--Hb_000243_210 Hb_000671_070--Hb_000914_120 Hb_089140_050 Hb_089140_050 Hb_000671_070--Hb_089140_050 Hb_006420_040 Hb_006420_040 Hb_000671_070--Hb_006420_040 Hb_001550_060 Hb_001550_060 Hb_000025_320--Hb_001550_060 Hb_000960_100 Hb_000960_100 Hb_000025_320--Hb_000960_100 Hb_002022_070 Hb_002022_070 Hb_000025_320--Hb_002022_070 Hb_000025_320--Hb_006420_040 Hb_027472_220 Hb_027472_220 Hb_002350_010--Hb_027472_220 Hb_002350_010--Hb_000671_070 Hb_002350_010--Hb_000025_710 Hb_000473_110 Hb_000473_110 Hb_002350_010--Hb_000473_110 Hb_000563_130 Hb_000563_130 Hb_002350_010--Hb_000563_130 Hb_188063_010 Hb_188063_010 Hb_000025_710--Hb_188063_010 Hb_005402_040 Hb_005402_040 Hb_000025_710--Hb_005402_040 Hb_000176_100 Hb_000176_100 Hb_000025_710--Hb_000176_100 Hb_002333_050 Hb_002333_050 Hb_000025_710--Hb_002333_050 Hb_005542_140 Hb_005542_140 Hb_000025_710--Hb_005542_140 Hb_001318_070 Hb_001318_070 Hb_000243_210--Hb_001318_070 Hb_000099_040 Hb_000099_040 Hb_000243_210--Hb_000099_040 Hb_000174_060 Hb_000174_060 Hb_000243_210--Hb_000174_060 Hb_002205_250 Hb_002205_250 Hb_000243_210--Hb_002205_250 Hb_000879_040 Hb_000879_040 Hb_000243_210--Hb_000879_040 Hb_000230_090 Hb_000230_090 Hb_000914_120--Hb_000230_090 Hb_008695_110 Hb_008695_110 Hb_000914_120--Hb_008695_110 Hb_001268_280 Hb_001268_280 Hb_000914_120--Hb_001268_280 Hb_000264_030 Hb_000264_030 Hb_000914_120--Hb_000264_030 Hb_001767_140 Hb_001767_140 Hb_000914_120--Hb_001767_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.96091 9.89486 6.04966 3.74066 8.60655 7.5368
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.38317 3.7254 4.40246 6.77454 8.21549

CAGE analysis