Hb_000473_110

Information

Type -
Description -
Location Contig473: 180205-185462
Sequence    

Annotation

kegg
ID vvi:100267623
description PP2A regulatory subunit TAP46
nr
ID XP_012080996.1
description PREDICTED: PP2A regulatory subunit TAP46 [Jatropha curcas]
swissprot
ID Q8LDQ4
description PP2A regulatory subunit TAP46 OS=Arabidopsis thaliana GN=TAP46 PE=1 SV=2
trembl
ID A0A067KF64
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16178 PE=4 SV=1
Gene Ontology
ID GO:0005829
description pp2a regulatory subunit tap46-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44423: 180235-184978 , PASA_asmbl_44424: 182229-182402
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000473_110 0.0 - - PREDICTED: PP2A regulatory subunit TAP46 [Jatropha curcas]
2 Hb_004079_060 0.0620879583 - - hypothetical protein JCGZ_07228 [Jatropha curcas]
3 Hb_006420_040 0.0623424403 transcription factor TF Family: Orphans PREDICTED: paired amphipathic helix protein Sin3-like 4 isoform X2 [Jatropha curcas]
4 Hb_000441_120 0.0627890838 - - PREDICTED: DNA-damage-repair/toleration protein DRT111, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_001814_030 0.0675706795 - - PREDICTED: uncharacterized protein LOC105650634 [Jatropha curcas]
6 Hb_002350_010 0.0722571187 - - PREDICTED: DNA-directed RNA polymerase III subunit rpc1 [Jatropha curcas]
7 Hb_000731_270 0.0724296413 - - PREDICTED: polyadenylate-binding protein RBP45B isoform X1 [Jatropha curcas]
8 Hb_001550_060 0.0724462254 - - PREDICTED: serine/threonine-protein phosphatase BSL3 isoform X4 [Jatropha curcas]
9 Hb_000412_010 0.0725624374 - - hect ubiquitin-protein ligase, putative [Ricinus communis]
10 Hb_009270_020 0.0735764412 - - PREDICTED: LOW QUALITY PROTEIN: helicase and polymerase-containing protein TEBICHI [Jatropha curcas]
11 Hb_000313_120 0.0739478578 - - PREDICTED: ALG-2 interacting protein X [Jatropha curcas]
12 Hb_001157_160 0.0761270806 - - PREDICTED: E3 ubiquitin-protein ligase BRE1-like 2 isoform X1 [Jatropha curcas]
13 Hb_001001_150 0.0782382633 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000563_130 0.0783912875 - - PREDICTED: WD repeat-containing protein 43 [Jatropha curcas]
15 Hb_000614_210 0.0789028247 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-1-like isoform X1 [Jatropha curcas]
16 Hb_001062_010 0.079258125 - - PREDICTED: CWF19-like protein 2 [Jatropha curcas]
17 Hb_000406_200 0.0793278762 - - PREDICTED: translation initiation factor eIF-2B subunit epsilon-like isoform X4 [Jatropha curcas]
18 Hb_004182_050 0.07964604 - - PREDICTED: serine/threonine-protein phosphatase BSL3 isoform X2 [Jatropha curcas]
19 Hb_000258_160 0.0802279251 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000006_040 0.080484394 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000473_110 Hb_000473_110 Hb_004079_060 Hb_004079_060 Hb_000473_110--Hb_004079_060 Hb_006420_040 Hb_006420_040 Hb_000473_110--Hb_006420_040 Hb_000441_120 Hb_000441_120 Hb_000473_110--Hb_000441_120 Hb_001814_030 Hb_001814_030 Hb_000473_110--Hb_001814_030 Hb_002350_010 Hb_002350_010 Hb_000473_110--Hb_002350_010 Hb_000731_270 Hb_000731_270 Hb_000473_110--Hb_000731_270 Hb_001999_290 Hb_001999_290 Hb_004079_060--Hb_001999_290 Hb_062226_070 Hb_062226_070 Hb_004079_060--Hb_062226_070 Hb_000258_160 Hb_000258_160 Hb_004079_060--Hb_000258_160 Hb_000174_270 Hb_000174_270 Hb_004079_060--Hb_000174_270 Hb_003494_020 Hb_003494_020 Hb_004079_060--Hb_003494_020 Hb_001550_060 Hb_001550_060 Hb_006420_040--Hb_001550_060 Hb_006420_040--Hb_000441_120 Hb_000671_070 Hb_000671_070 Hb_006420_040--Hb_000671_070 Hb_000025_320 Hb_000025_320 Hb_006420_040--Hb_000025_320 Hb_003206_130 Hb_003206_130 Hb_006420_040--Hb_003206_130 Hb_009503_030 Hb_009503_030 Hb_006420_040--Hb_009503_030 Hb_000165_040 Hb_000165_040 Hb_000441_120--Hb_000165_040 Hb_000441_120--Hb_003206_130 Hb_000207_180 Hb_000207_180 Hb_000441_120--Hb_000207_180 Hb_000395_130 Hb_000395_130 Hb_000441_120--Hb_000395_130 Hb_009270_020 Hb_009270_020 Hb_000441_120--Hb_009270_020 Hb_004586_220 Hb_004586_220 Hb_001814_030--Hb_004586_220 Hb_002205_250 Hb_002205_250 Hb_001814_030--Hb_002205_250 Hb_000614_210 Hb_000614_210 Hb_001814_030--Hb_000614_210 Hb_012395_140 Hb_012395_140 Hb_001814_030--Hb_012395_140 Hb_159558_010 Hb_159558_010 Hb_001814_030--Hb_159558_010 Hb_020378_030 Hb_020378_030 Hb_001814_030--Hb_020378_030 Hb_001191_120 Hb_001191_120 Hb_002350_010--Hb_001191_120 Hb_027472_220 Hb_027472_220 Hb_002350_010--Hb_027472_220 Hb_002350_010--Hb_000671_070 Hb_000025_710 Hb_000025_710 Hb_002350_010--Hb_000025_710 Hb_000563_130 Hb_000563_130 Hb_002350_010--Hb_000563_130 Hb_000347_070 Hb_000347_070 Hb_000731_270--Hb_000347_070 Hb_007645_100 Hb_007645_100 Hb_000731_270--Hb_007645_100 Hb_000731_270--Hb_000207_180 Hb_000731_270--Hb_006420_040 Hb_004254_090 Hb_004254_090 Hb_000731_270--Hb_004254_090 Hb_000731_270--Hb_000441_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.8489 31.2705 22.1045 19.1624 34.0035 21.6357
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.2409 19.238 23.3855 32.7288 33.4259

CAGE analysis