Hb_004079_060

Information

Type -
Description -
Location Contig4079: 44030-51383
Sequence    

Annotation

kegg
ID tcc:TCM_037898
description Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family isoform 1
nr
ID KDP33657.1
description hypothetical protein JCGZ_07228 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KBX2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07228 PE=4 SV=1
Gene Ontology
ID GO:0005622
description late embryogenesis abundant hydroxyproline-rich glycoprotein family isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40358: 44036-51217
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004079_060 0.0 - - hypothetical protein JCGZ_07228 [Jatropha curcas]
2 Hb_001999_290 0.0547215426 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 7, chloroplastic-like [Jatropha curcas]
3 Hb_062226_070 0.0618631732 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 4 isoform X1 [Jatropha curcas]
4 Hb_000473_110 0.0620879583 - - PREDICTED: PP2A regulatory subunit TAP46 [Jatropha curcas]
5 Hb_000258_160 0.0639556279 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000174_270 0.0681627324 - - PREDICTED: type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3 isoform X1 [Jatropha curcas]
7 Hb_003494_020 0.0724385392 - - ATP-dependent RNA and DNA helicase, putative [Ricinus communis]
8 Hb_000614_210 0.076562846 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-1-like isoform X1 [Jatropha curcas]
9 Hb_006420_040 0.0779043458 transcription factor TF Family: Orphans PREDICTED: paired amphipathic helix protein Sin3-like 4 isoform X2 [Jatropha curcas]
10 Hb_004970_170 0.0779683576 transcription factor TF Family: bZIP PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 5 [Jatropha curcas]
11 Hb_000028_130 0.0780166515 - - PREDICTED: uncharacterized protein LOC105645303 isoform X1 [Jatropha curcas]
12 Hb_001157_160 0.0783029962 - - PREDICTED: E3 ubiquitin-protein ligase BRE1-like 2 isoform X1 [Jatropha curcas]
13 Hb_004182_050 0.0795657897 - - PREDICTED: serine/threonine-protein phosphatase BSL3 isoform X2 [Jatropha curcas]
14 Hb_162275_050 0.0800378889 - - PREDICTED: mRNA-capping enzyme [Jatropha curcas]
15 Hb_007441_160 0.0803153698 - - RNA binding protein, putative [Ricinus communis]
16 Hb_000866_460 0.080742416 - - PREDICTED: acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic-like [Jatropha curcas]
17 Hb_000340_530 0.0811349673 - - hypothetical protein VITISV_016664 [Vitis vinifera]
18 Hb_000313_120 0.0812294127 - - PREDICTED: ALG-2 interacting protein X [Jatropha curcas]
19 Hb_002234_170 0.0820505097 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1 [Jatropha curcas]
20 Hb_001257_010 0.083104293 - - PREDICTED: apoptosis-inducing factor 2-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004079_060 Hb_004079_060 Hb_001999_290 Hb_001999_290 Hb_004079_060--Hb_001999_290 Hb_062226_070 Hb_062226_070 Hb_004079_060--Hb_062226_070 Hb_000473_110 Hb_000473_110 Hb_004079_060--Hb_000473_110 Hb_000258_160 Hb_000258_160 Hb_004079_060--Hb_000258_160 Hb_000174_270 Hb_000174_270 Hb_004079_060--Hb_000174_270 Hb_003494_020 Hb_003494_020 Hb_004079_060--Hb_003494_020 Hb_001157_240 Hb_001157_240 Hb_001999_290--Hb_001157_240 Hb_001999_290--Hb_000174_270 Hb_005736_020 Hb_005736_020 Hb_001999_290--Hb_005736_020 Hb_001004_060 Hb_001004_060 Hb_001999_290--Hb_001004_060 Hb_001999_290--Hb_062226_070 Hb_062226_070--Hb_003494_020 Hb_000028_130 Hb_000028_130 Hb_062226_070--Hb_000028_130 Hb_062226_070--Hb_000174_270 Hb_005582_040 Hb_005582_040 Hb_062226_070--Hb_005582_040 Hb_006420_040 Hb_006420_040 Hb_000473_110--Hb_006420_040 Hb_000441_120 Hb_000441_120 Hb_000473_110--Hb_000441_120 Hb_001814_030 Hb_001814_030 Hb_000473_110--Hb_001814_030 Hb_002350_010 Hb_002350_010 Hb_000473_110--Hb_002350_010 Hb_000731_270 Hb_000731_270 Hb_000473_110--Hb_000731_270 Hb_000258_160--Hb_003494_020 Hb_000041_110 Hb_000041_110 Hb_000258_160--Hb_000041_110 Hb_019863_070 Hb_019863_070 Hb_000258_160--Hb_019863_070 Hb_000340_530 Hb_000340_530 Hb_000258_160--Hb_000340_530 Hb_162275_050 Hb_162275_050 Hb_000258_160--Hb_162275_050 Hb_000174_270--Hb_003494_020 Hb_000174_270--Hb_000028_130 Hb_000037_190 Hb_000037_190 Hb_000174_270--Hb_000037_190 Hb_001635_120 Hb_001635_120 Hb_000174_270--Hb_001635_120 Hb_002234_170 Hb_002234_170 Hb_003494_020--Hb_002234_170 Hb_003494_020--Hb_000028_130 Hb_002818_030 Hb_002818_030 Hb_003494_020--Hb_002818_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.8874 45.7526 24.3094 26.0766 37.178 27.0419
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.8969 27.9916 33.4595 30.5648 44.0028

CAGE analysis