Hb_005736_020

Information

Type -
Description -
Location Contig5736: 36394-46380
Sequence    

Annotation

kegg
ID pop:POPTR_0005s20940g
description hypothetical protein
nr
ID XP_006383611.1
description hypothetical protein POPTR_0005s20940g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5GCY9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s20940g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49511: 36647-46350 , PASA_asmbl_49513: 37365-38652 , PASA_asmbl_49515: 43575-45106
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005736_020 0.0 - - hypothetical protein POPTR_0005s20940g [Populus trichocarpa]
2 Hb_005686_090 0.0517674289 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 2 isoform X1 [Jatropha curcas]
3 Hb_001157_240 0.0554805203 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Jatropha curcas]
4 Hb_001999_290 0.0574977414 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 7, chloroplastic-like [Jatropha curcas]
5 Hb_001004_060 0.0614495903 - - PREDICTED: uncharacterized protein LOC105630220 isoform X4 [Jatropha curcas]
6 Hb_001008_120 0.063766945 desease resistance Gene Name: PEX-1N peroxisome biogenesis factor, putative [Ricinus communis]
7 Hb_000204_120 0.0644044992 - - PREDICTED: uncharacterized protein LOC105639239 [Jatropha curcas]
8 Hb_000388_090 0.065423552 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like [Jatropha curcas]
9 Hb_000672_040 0.0658471852 - - PREDICTED: ENHANCER OF AG-4 protein 2 [Jatropha curcas]
10 Hb_011671_410 0.0666783733 transcription factor TF Family: SET histone-lysine n-methyltransferase, suvh, putative [Ricinus communis]
11 Hb_005582_040 0.0687263257 - - PREDICTED: regulator of nonsense transcripts 1 homolog [Jatropha curcas]
12 Hb_001304_110 0.0702803154 transcription factor TF Family: WRKY WRKY protein [Hevea brasiliensis]
13 Hb_000640_040 0.0773223536 - - PREDICTED: bromodomain and WD repeat-containing protein 1 isoform X2 [Jatropha curcas]
14 Hb_000329_710 0.0786107961 - - PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1 isoform X1 [Jatropha curcas]
15 Hb_001417_030 0.079144458 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
16 Hb_001865_070 0.0792666824 - - PREDICTED: uncharacterized protein LOC105647937 isoform X1 [Jatropha curcas]
17 Hb_000174_270 0.0803151403 - - PREDICTED: type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3 isoform X1 [Jatropha curcas]
18 Hb_062226_070 0.0813365851 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 4 isoform X1 [Jatropha curcas]
19 Hb_001205_230 0.0818447852 - - PREDICTED: acidic leucine-rich nuclear phosphoprotein 32-related protein [Jatropha curcas]
20 Hb_005116_050 0.0820913193 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02820, mitochondrial isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005736_020 Hb_005736_020 Hb_005686_090 Hb_005686_090 Hb_005736_020--Hb_005686_090 Hb_001157_240 Hb_001157_240 Hb_005736_020--Hb_001157_240 Hb_001999_290 Hb_001999_290 Hb_005736_020--Hb_001999_290 Hb_001004_060 Hb_001004_060 Hb_005736_020--Hb_001004_060 Hb_001008_120 Hb_001008_120 Hb_005736_020--Hb_001008_120 Hb_000204_120 Hb_000204_120 Hb_005736_020--Hb_000204_120 Hb_001304_110 Hb_001304_110 Hb_005686_090--Hb_001304_110 Hb_002518_260 Hb_002518_260 Hb_005686_090--Hb_002518_260 Hb_029510_050 Hb_029510_050 Hb_005686_090--Hb_029510_050 Hb_005686_090--Hb_001008_120 Hb_028912_050 Hb_028912_050 Hb_005686_090--Hb_028912_050 Hb_001157_240--Hb_001999_290 Hb_003943_110 Hb_003943_110 Hb_001157_240--Hb_003943_110 Hb_005582_040 Hb_005582_040 Hb_001157_240--Hb_005582_040 Hb_000640_040 Hb_000640_040 Hb_001157_240--Hb_000640_040 Hb_001157_240--Hb_001008_120 Hb_000174_270 Hb_000174_270 Hb_001999_290--Hb_000174_270 Hb_004079_060 Hb_004079_060 Hb_001999_290--Hb_004079_060 Hb_001999_290--Hb_001004_060 Hb_062226_070 Hb_062226_070 Hb_001999_290--Hb_062226_070 Hb_000329_710 Hb_000329_710 Hb_001004_060--Hb_000329_710 Hb_000792_010 Hb_000792_010 Hb_001004_060--Hb_000792_010 Hb_000327_270 Hb_000327_270 Hb_001004_060--Hb_000327_270 Hb_001205_230 Hb_001205_230 Hb_001004_060--Hb_001205_230 Hb_001008_120--Hb_028912_050 Hb_002263_020 Hb_002263_020 Hb_001008_120--Hb_002263_020 Hb_000720_050 Hb_000720_050 Hb_001008_120--Hb_000720_050 Hb_002686_090 Hb_002686_090 Hb_000204_120--Hb_002686_090 Hb_011671_410 Hb_011671_410 Hb_000204_120--Hb_011671_410 Hb_001865_070 Hb_001865_070 Hb_000204_120--Hb_001865_070 Hb_000388_090 Hb_000388_090 Hb_000204_120--Hb_000388_090 Hb_000672_040 Hb_000672_040 Hb_000204_120--Hb_000672_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.2493 24.6437 12.2682 18.5225 15.7738 21.8828
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.6456 19.3696 25.8367 20.4659 37.2941

CAGE analysis