Hb_000720_050

Information

Type -
Description -
Location Contig720: 72953-103397
Sequence    

Annotation

kegg
ID rcu:RCOM_1685460
description hypothetical protein
nr
ID XP_012086973.1
description PREDICTED: uncharacterized protein LOC105645857 isoform X1 [Jatropha curcas]
swissprot
ID Q93Z92
description E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana GN=At4g11680 PE=2 SV=1
trembl
ID B9RC57
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1685460 PE=4 SV=1
Gene Ontology
ID GO:0005515
description PREDICTED: uncharacterized protein LOC105645857 isoform X1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55621: 72765-76267 , PASA_asmbl_55622: 72765-76237 , PASA_asmbl_55623: 74301-74775 , PASA_asmbl_55624: 76863-78423 , PASA_asmbl_55625: 80105-81947 , PASA_asmbl_55626: 84867-87264 , PASA_asmbl_55628: 100687-102592
cDNA
(Sanger)
(ID:Location)		 015_H08.ab1: 72765-73142 , 018_N16.ab1: 72765-73960

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000720_050 0.0 - - PREDICTED: uncharacterized protein LOC105645857 isoform X1 [Jatropha curcas]
2 Hb_001789_110 0.0627569997 - - ubiquitin-protein ligase, putative [Ricinus communis]
3 Hb_188281_040 0.0676465499 - - PREDICTED: transcription initiation factor TFIID subunit 12 [Jatropha curcas]
4 Hb_001008_120 0.0679476295 desease resistance Gene Name: PEX-1N peroxisome biogenesis factor, putative [Ricinus communis]
5 Hb_000441_090 0.070030368 - - PREDICTED: serine/threonine-protein phosphatase 6 regulatory subunit 2 [Jatropha curcas]
6 Hb_001936_090 0.0706551331 - - PREDICTED: BOI-related E3 ubiquitin-protein ligase 1-like isoform X1 [Jatropha curcas]
7 Hb_000789_200 0.0713282024 - - mitochondrial processing peptidase alpha subunit, putative [Ricinus communis]
8 Hb_001157_240 0.0713453436 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Jatropha curcas]
9 Hb_008387_020 0.0735350607 - - PREDICTED: FHA domain-containing protein DDL isoform X1 [Jatropha curcas]
10 Hb_003517_040 0.0736881645 - - PREDICTED: putative DUF21 domain-containing protein At3g13070, chloroplastic [Jatropha curcas]
11 Hb_001999_290 0.0766192132 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 7, chloroplastic-like [Jatropha curcas]
12 Hb_003040_050 0.0775063395 - - PREDICTED: uncharacterized protein LOC105638219 [Jatropha curcas]
13 Hb_000406_200 0.0777555242 - - PREDICTED: translation initiation factor eIF-2B subunit epsilon-like isoform X4 [Jatropha curcas]
14 Hb_001862_130 0.078487932 - - Protein FRIGIDA, putative [Ricinus communis]
15 Hb_001589_010 0.0792882028 - - PREDICTED: uncharacterized protein LOC105638192 isoform X1 [Jatropha curcas]
16 Hb_009288_020 0.0794495703 - - PREDICTED: protein FRIGIDA [Jatropha curcas]
17 Hb_000347_430 0.0804602911 - - PREDICTED: mitochondrial ubiquitin ligase activator of nfkb 1-A [Jatropha curcas]
18 Hb_000749_090 0.0809119427 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_000053_040 0.0814820218 - - hypothetical protein CISIN_1g0010392mg, partial [Citrus sinensis]
20 Hb_005582_040 0.0822546717 - - PREDICTED: regulator of nonsense transcripts 1 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_000720_050 Hb_000720_050 Hb_001789_110 Hb_001789_110 Hb_000720_050--Hb_001789_110 Hb_188281_040 Hb_188281_040 Hb_000720_050--Hb_188281_040 Hb_001008_120 Hb_001008_120 Hb_000720_050--Hb_001008_120 Hb_000441_090 Hb_000441_090 Hb_000720_050--Hb_000441_090 Hb_001936_090 Hb_001936_090 Hb_000720_050--Hb_001936_090 Hb_000789_200 Hb_000789_200 Hb_000720_050--Hb_000789_200 Hb_027073_020 Hb_027073_020 Hb_001789_110--Hb_027073_020 Hb_003517_040 Hb_003517_040 Hb_001789_110--Hb_003517_040 Hb_007413_010 Hb_007413_010 Hb_001789_110--Hb_007413_010 Hb_122968_010 Hb_122968_010 Hb_001789_110--Hb_122968_010 Hb_001789_110--Hb_188281_040 Hb_006913_020 Hb_006913_020 Hb_001789_110--Hb_006913_020 Hb_000406_200 Hb_000406_200 Hb_188281_040--Hb_000406_200 Hb_003117_030 Hb_003117_030 Hb_188281_040--Hb_003117_030 Hb_005489_040 Hb_005489_040 Hb_188281_040--Hb_005489_040 Hb_000409_050 Hb_000409_050 Hb_188281_040--Hb_000409_050 Hb_000363_310 Hb_000363_310 Hb_188281_040--Hb_000363_310 Hb_028912_050 Hb_028912_050 Hb_001008_120--Hb_028912_050 Hb_005736_020 Hb_005736_020 Hb_001008_120--Hb_005736_020 Hb_002263_020 Hb_002263_020 Hb_001008_120--Hb_002263_020 Hb_001157_240 Hb_001157_240 Hb_001008_120--Hb_001157_240 Hb_005686_090 Hb_005686_090 Hb_001008_120--Hb_005686_090 Hb_000258_070 Hb_000258_070 Hb_000441_090--Hb_000258_070 Hb_000441_090--Hb_003517_040 Hb_000317_100 Hb_000317_100 Hb_000441_090--Hb_000317_100 Hb_005215_010 Hb_005215_010 Hb_000441_090--Hb_005215_010 Hb_002027_080 Hb_002027_080 Hb_000441_090--Hb_002027_080 Hb_003040_050 Hb_003040_050 Hb_000441_090--Hb_003040_050 Hb_029584_070 Hb_029584_070 Hb_001936_090--Hb_029584_070 Hb_002758_010 Hb_002758_010 Hb_001936_090--Hb_002758_010 Hb_000130_320 Hb_000130_320 Hb_001936_090--Hb_000130_320 Hb_001936_090--Hb_188281_040 Hb_001347_060 Hb_001347_060 Hb_001936_090--Hb_001347_060 Hb_000789_200--Hb_027073_020 Hb_002768_060 Hb_002768_060 Hb_000789_200--Hb_002768_060 Hb_000656_010 Hb_000656_010 Hb_000789_200--Hb_000656_010 Hb_004480_100 Hb_004480_100 Hb_000789_200--Hb_004480_100 Hb_000789_200--Hb_001789_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.56633 12.9213 8.94026 12.4595 12.1555 10.8508
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.1458 9.88649 9.87825 13.9284 23.7952

CAGE analysis