Hb_001936_090

Information

Type -
Description -
Location Contig1936: 77507-83041
Sequence    

Annotation

kegg
ID pop:POPTR_0010s05200g
description POPTRDRAFT_726294; hypothetical protein
nr
ID XP_012085419.1
description PREDICTED: BOI-related E3 ubiquitin-protein ligase 1-like isoform X1 [Jatropha curcas]
swissprot
ID Q9LDD1
description Probable BOI-related E3 ubiquitin-protein ligase 3 OS=Arabidopsis thaliana GN=BRG3 PE=1 SV=1
trembl
ID A0A067JRT7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17770 PE=4 SV=1
Gene Ontology
ID GO:0005634
description boi-related e3 ubiquitin-protein ligase 1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19339: 77491-82913 , PASA_asmbl_19340: 80263-80395 , PASA_asmbl_19341: 82477-82609
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001936_090 0.0 - - PREDICTED: BOI-related E3 ubiquitin-protein ligase 1-like isoform X1 [Jatropha curcas]
2 Hb_029584_070 0.0605735765 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like [Jatropha curcas]
3 Hb_000720_050 0.0706551331 - - PREDICTED: uncharacterized protein LOC105645857 isoform X1 [Jatropha curcas]
4 Hb_002758_010 0.0787370085 - - PREDICTED: ribonuclease II, chloroplastic/mitochondrial [Populus euphratica]
5 Hb_000130_320 0.0789644198 desease resistance Gene Name: AAA PREDICTED: uncharacterized protein ycf45 [Jatropha curcas]
6 Hb_188281_040 0.0793009319 - - PREDICTED: transcription initiation factor TFIID subunit 12 [Jatropha curcas]
7 Hb_001347_060 0.0801205122 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
8 Hb_003020_030 0.0804817879 - - PREDICTED: protein TOC75-3, chloroplastic-like [Populus euphratica]
9 Hb_001163_060 0.0806171664 - - neutral/alkaline invertase [Manihot esculenta]
10 Hb_005253_030 0.0809951933 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_001589_010 0.0813009552 - - PREDICTED: uncharacterized protein LOC105638192 isoform X1 [Jatropha curcas]
12 Hb_017469_110 0.0823493389 - - PREDICTED: uncharacterized protein LOC105641795 [Jatropha curcas]
13 Hb_000482_190 0.082767277 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
14 Hb_000099_160 0.0835346887 - - PREDICTED: potassium transporter 3 isoform X2 [Populus euphratica]
15 Hb_001790_080 0.0841363644 - - PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic isoform X3 [Jatropha curcas]
16 Hb_001789_110 0.0873844073 - - ubiquitin-protein ligase, putative [Ricinus communis]
17 Hb_036790_080 0.0920502887 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 39 [Jatropha curcas]
18 Hb_000445_090 0.0939092348 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH2 [Jatropha curcas]
19 Hb_000025_270 0.0947460409 - - PREDICTED: proteinaceous RNase P 1, chloroplastic/mitochondrial-like [Jatropha curcas]
20 Hb_007763_070 0.0956908159 - - PREDICTED: pentatricopeptide repeat-containing protein At1g71460, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001936_090 Hb_001936_090 Hb_029584_070 Hb_029584_070 Hb_001936_090--Hb_029584_070 Hb_000720_050 Hb_000720_050 Hb_001936_090--Hb_000720_050 Hb_002758_010 Hb_002758_010 Hb_001936_090--Hb_002758_010 Hb_000130_320 Hb_000130_320 Hb_001936_090--Hb_000130_320 Hb_188281_040 Hb_188281_040 Hb_001936_090--Hb_188281_040 Hb_001347_060 Hb_001347_060 Hb_001936_090--Hb_001347_060 Hb_001790_080 Hb_001790_080 Hb_029584_070--Hb_001790_080 Hb_000130_260 Hb_000130_260 Hb_029584_070--Hb_000130_260 Hb_003020_030 Hb_003020_030 Hb_029584_070--Hb_003020_030 Hb_000445_090 Hb_000445_090 Hb_029584_070--Hb_000445_090 Hb_001163_060 Hb_001163_060 Hb_029584_070--Hb_001163_060 Hb_001789_110 Hb_001789_110 Hb_000720_050--Hb_001789_110 Hb_000720_050--Hb_188281_040 Hb_001008_120 Hb_001008_120 Hb_000720_050--Hb_001008_120 Hb_000441_090 Hb_000441_090 Hb_000720_050--Hb_000441_090 Hb_000789_200 Hb_000789_200 Hb_000720_050--Hb_000789_200 Hb_002758_010--Hb_000130_320 Hb_002205_230 Hb_002205_230 Hb_002758_010--Hb_002205_230 Hb_005731_160 Hb_005731_160 Hb_002758_010--Hb_005731_160 Hb_005253_030 Hb_005253_030 Hb_002758_010--Hb_005253_030 Hb_001589_010 Hb_001589_010 Hb_002758_010--Hb_001589_010 Hb_000648_040 Hb_000648_040 Hb_000130_320--Hb_000648_040 Hb_000130_320--Hb_001790_080 Hb_032920_050 Hb_032920_050 Hb_000130_320--Hb_032920_050 Hb_000749_090 Hb_000749_090 Hb_000130_320--Hb_000749_090 Hb_188281_040--Hb_001789_110 Hb_000406_200 Hb_000406_200 Hb_188281_040--Hb_000406_200 Hb_003117_030 Hb_003117_030 Hb_188281_040--Hb_003117_030 Hb_005489_040 Hb_005489_040 Hb_188281_040--Hb_005489_040 Hb_000409_050 Hb_000409_050 Hb_188281_040--Hb_000409_050 Hb_000363_310 Hb_000363_310 Hb_188281_040--Hb_000363_310 Hb_000347_430 Hb_000347_430 Hb_001347_060--Hb_000347_430 Hb_008033_040 Hb_008033_040 Hb_001347_060--Hb_008033_040 Hb_004108_160 Hb_004108_160 Hb_001347_060--Hb_004108_160 Hb_001347_060--Hb_000363_310 Hb_001347_060--Hb_000406_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.1265 17.1237 18.4962 16.4642 21.6117 15.594
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.2294 19.4087 13.3174 19.2787 44.8143

CAGE analysis