Hb_000749_090

Information

Type -
Description -
Location Contig749: 70941-73276
Sequence    

Annotation

kegg
ID rcu:RCOM_1010390
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002527601.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q84JR3
description Pentatricopeptide repeat-containing protein At4g21705, mitochondrial OS=Arabidopsis thaliana GN=At4g21705 PE=2 SV=1
trembl
ID B9SNN7
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1010390 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56784: 71252-72416 , PASA_asmbl_56785: 72637-73097
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000749_090 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_008387_020 0.0642898 - - PREDICTED: FHA domain-containing protein DDL isoform X1 [Jatropha curcas]
3 Hb_000731_010 0.0713197288 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic [Jatropha curcas]
4 Hb_009252_040 0.0751790818 - - PREDICTED: protein EXECUTER 2, chloroplastic [Jatropha curcas]
5 Hb_000130_320 0.0763064662 desease resistance Gene Name: AAA PREDICTED: uncharacterized protein ycf45 [Jatropha curcas]
6 Hb_000568_050 0.0787769273 - - PREDICTED: endoplasmic reticulum metallopeptidase 1 isoform X2 [Jatropha curcas]
7 Hb_007763_070 0.0803731209 - - PREDICTED: pentatricopeptide repeat-containing protein At1g71460, chloroplastic [Jatropha curcas]
8 Hb_004327_040 0.0807967019 - - PREDICTED: tetratricopeptide repeat protein 27 homolog [Jatropha curcas]
9 Hb_000720_050 0.0809119427 - - PREDICTED: uncharacterized protein LOC105645857 isoform X1 [Jatropha curcas]
10 Hb_004003_040 0.0840186386 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
11 Hb_011174_020 0.0848199111 - - PREDICTED: uncharacterized protein LOC105632610 [Jatropha curcas]
12 Hb_001789_110 0.0849210229 - - ubiquitin-protein ligase, putative [Ricinus communis]
13 Hb_122968_010 0.0851288498 - - hypothetical protein JCGZ_23576 [Jatropha curcas]
14 Hb_000007_010 0.0852335859 - - PREDICTED: protein PHYLLO, chloroplastic [Jatropha curcas]
15 Hb_003117_030 0.0863352171 - - PREDICTED: protein RCC2 homolog [Jatropha curcas]
16 Hb_000189_320 0.0869927679 - - PREDICTED: multisubstrate pseudouridine synthase 7 isoform X2 [Jatropha curcas]
17 Hb_001008_120 0.0872399583 desease resistance Gene Name: PEX-1N peroxisome biogenesis factor, putative [Ricinus communis]
18 Hb_003517_040 0.090952586 - - PREDICTED: putative DUF21 domain-containing protein At3g13070, chloroplastic [Jatropha curcas]
19 Hb_003734_010 0.0910752156 - - PREDICTED: double-strand break repair protein MRE11 [Jatropha curcas]
20 Hb_135572_010 0.0914319065 - - GTP-binding protein alpha subunit, gna, putative [Ricinus communis]

Gene co-expression network

sample Hb_000749_090 Hb_000749_090 Hb_008387_020 Hb_008387_020 Hb_000749_090--Hb_008387_020 Hb_000731_010 Hb_000731_010 Hb_000749_090--Hb_000731_010 Hb_009252_040 Hb_009252_040 Hb_000749_090--Hb_009252_040 Hb_000130_320 Hb_000130_320 Hb_000749_090--Hb_000130_320 Hb_000568_050 Hb_000568_050 Hb_000749_090--Hb_000568_050 Hb_007763_070 Hb_007763_070 Hb_000749_090--Hb_007763_070 Hb_007426_110 Hb_007426_110 Hb_008387_020--Hb_007426_110 Hb_003517_040 Hb_003517_040 Hb_008387_020--Hb_003517_040 Hb_028960_020 Hb_028960_020 Hb_008387_020--Hb_028960_020 Hb_188281_040 Hb_188281_040 Hb_008387_020--Hb_188281_040 Hb_008387_020--Hb_000568_050 Hb_000731_010--Hb_009252_040 Hb_004003_040 Hb_004003_040 Hb_000731_010--Hb_004003_040 Hb_000538_280 Hb_000538_280 Hb_000731_010--Hb_000538_280 Hb_000331_560 Hb_000331_560 Hb_000731_010--Hb_000331_560 Hb_135572_010 Hb_135572_010 Hb_000731_010--Hb_135572_010 Hb_000033_110 Hb_000033_110 Hb_009252_040--Hb_000033_110 Hb_018118_010 Hb_018118_010 Hb_009252_040--Hb_018118_010 Hb_013405_080 Hb_013405_080 Hb_009252_040--Hb_013405_080 Hb_009252_040--Hb_000331_560 Hb_000648_040 Hb_000648_040 Hb_000130_320--Hb_000648_040 Hb_002758_010 Hb_002758_010 Hb_000130_320--Hb_002758_010 Hb_001790_080 Hb_001790_080 Hb_000130_320--Hb_001790_080 Hb_032920_050 Hb_032920_050 Hb_000130_320--Hb_032920_050 Hb_001936_090 Hb_001936_090 Hb_000130_320--Hb_001936_090 Hb_011174_020 Hb_011174_020 Hb_000568_050--Hb_011174_020 Hb_012055_110 Hb_012055_110 Hb_000568_050--Hb_012055_110 Hb_006663_060 Hb_006663_060 Hb_000568_050--Hb_006663_060 Hb_000011_270 Hb_000011_270 Hb_000568_050--Hb_000011_270 Hb_000608_300 Hb_000608_300 Hb_000568_050--Hb_000608_300 Hb_000826_070 Hb_000826_070 Hb_000568_050--Hb_000826_070 Hb_001712_060 Hb_001712_060 Hb_007763_070--Hb_001712_060 Hb_006775_130 Hb_006775_130 Hb_007763_070--Hb_006775_130 Hb_000193_330 Hb_000193_330 Hb_007763_070--Hb_000193_330 Hb_000465_280 Hb_000465_280 Hb_007763_070--Hb_000465_280 Hb_001789_110 Hb_001789_110 Hb_007763_070--Hb_001789_110 Hb_007763_070--Hb_000538_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.91786 4.01156 2.92176 3.5938 2.85378 4.52306
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.98816 2.94393 2.27894 4.73172 8.43439

CAGE analysis