Hb_000731_010

Information

Type -
Description -
Location Contig731: 4389-9794
Sequence    

Annotation

kegg
ID pop:POPTR_0009s09240g
description POPTRDRAFT_821289; ATP-dependent Clp protease proteolytic subunit family protein
nr
ID XP_012093109.1
description PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic [Jatropha curcas]
swissprot
ID Q9XJ35
description ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic OS=Arabidopsis thaliana GN=CLPR1 PE=1 SV=1
trembl
ID A0A067LB65
description ATP-dependent Clp protease proteolytic subunit OS=Jatropha curcas GN=JCGZ_16316 PE=3 SV=1
Gene Ontology
ID GO:0009534
description atp-dependent clp protease proteolytic subunit-related protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55968: 4484-9710
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000731_010 0.0 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic [Jatropha curcas]
2 Hb_009252_040 0.0684321653 - - PREDICTED: protein EXECUTER 2, chloroplastic [Jatropha curcas]
3 Hb_000749_090 0.0713197288 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_004003_040 0.0765337545 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
5 Hb_000538_280 0.0795486013 - - PREDICTED: uncharacterized protein LOC105642112 [Jatropha curcas]
6 Hb_000331_560 0.0822253774 transcription factor TF Family: C2H2 PREDICTED: lysine-specific demethylase REF6 [Jatropha curcas]
7 Hb_135572_010 0.085962145 - - GTP-binding protein alpha subunit, gna, putative [Ricinus communis]
8 Hb_007994_010 0.0871505865 transcription factor TF Family: FAR1 PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X1 [Jatropha curcas]
9 Hb_000925_090 0.0876086668 - - PREDICTED: uncharacterized protein LOC105635805 isoform X1 [Jatropha curcas]
10 Hb_003124_100 0.0887296371 - - -
11 Hb_018118_010 0.090035349 - - DNA polymerase I, putative [Ricinus communis]
12 Hb_011174_020 0.0927837686 - - PREDICTED: uncharacterized protein LOC105632610 [Jatropha curcas]
13 Hb_143489_010 0.0930465966 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 50 isoform X2 [Jatropha curcas]
14 Hb_012244_020 0.093517095 - - calpain, putative [Ricinus communis]
15 Hb_001377_100 0.0960890656 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]
16 Hb_000363_300 0.0963148038 - - PREDICTED: protein ENHANCED DOWNY MILDEW 2 isoform X1 [Jatropha curcas]
17 Hb_002600_060 0.0969489676 - - PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]
18 Hb_000320_470 0.0971501635 - - calcium-dependent protein kinase [Hevea brasiliensis]
19 Hb_006031_010 0.0976482209 - - PREDICTED: transcription initiation factor TFIID subunit 15b isoform X3 [Jatropha curcas]
20 Hb_001925_060 0.0977384652 - - PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_000731_010 Hb_000731_010 Hb_009252_040 Hb_009252_040 Hb_000731_010--Hb_009252_040 Hb_000749_090 Hb_000749_090 Hb_000731_010--Hb_000749_090 Hb_004003_040 Hb_004003_040 Hb_000731_010--Hb_004003_040 Hb_000538_280 Hb_000538_280 Hb_000731_010--Hb_000538_280 Hb_000331_560 Hb_000331_560 Hb_000731_010--Hb_000331_560 Hb_135572_010 Hb_135572_010 Hb_000731_010--Hb_135572_010 Hb_000033_110 Hb_000033_110 Hb_009252_040--Hb_000033_110 Hb_009252_040--Hb_000749_090 Hb_018118_010 Hb_018118_010 Hb_009252_040--Hb_018118_010 Hb_013405_080 Hb_013405_080 Hb_009252_040--Hb_013405_080 Hb_009252_040--Hb_000331_560 Hb_008387_020 Hb_008387_020 Hb_000749_090--Hb_008387_020 Hb_000130_320 Hb_000130_320 Hb_000749_090--Hb_000130_320 Hb_000568_050 Hb_000568_050 Hb_000749_090--Hb_000568_050 Hb_007763_070 Hb_007763_070 Hb_000749_090--Hb_007763_070 Hb_000346_060 Hb_000346_060 Hb_004003_040--Hb_000346_060 Hb_002027_080 Hb_002027_080 Hb_004003_040--Hb_002027_080 Hb_000441_090 Hb_000441_090 Hb_004003_040--Hb_000441_090 Hb_000193_330 Hb_000193_330 Hb_004003_040--Hb_000193_330 Hb_000797_040 Hb_000797_040 Hb_004003_040--Hb_000797_040 Hb_003040_050 Hb_003040_050 Hb_000538_280--Hb_003040_050 Hb_000538_280--Hb_000193_330 Hb_009288_020 Hb_009288_020 Hb_000538_280--Hb_009288_020 Hb_001005_130 Hb_001005_130 Hb_000538_280--Hb_001005_130 Hb_000059_230 Hb_000059_230 Hb_000538_280--Hb_000059_230 Hb_005701_130 Hb_005701_130 Hb_000538_280--Hb_005701_130 Hb_002600_060 Hb_002600_060 Hb_000331_560--Hb_002600_060 Hb_003203_030 Hb_003203_030 Hb_000331_560--Hb_003203_030 Hb_000331_560--Hb_018118_010 Hb_003506_050 Hb_003506_050 Hb_000331_560--Hb_003506_050 Hb_000300_120 Hb_000300_120 Hb_000331_560--Hb_000300_120 Hb_007994_010 Hb_007994_010 Hb_135572_010--Hb_007994_010 Hb_001377_100 Hb_001377_100 Hb_135572_010--Hb_001377_100 Hb_004143_160 Hb_004143_160 Hb_135572_010--Hb_004143_160 Hb_000358_050 Hb_000358_050 Hb_135572_010--Hb_000358_050 Hb_000363_300 Hb_000363_300 Hb_135572_010--Hb_000363_300 Hb_000922_030 Hb_000922_030 Hb_135572_010--Hb_000922_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.3878 34.0802 22.1807 24.1607 16.9416 38.4201
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.9207 14.2387 14.9321 26.5434 57.009

CAGE analysis