Hb_003506_050

Information

Type -
Description -
Location Contig3506: 73562-75490
Sequence    

Annotation

kegg
ID rcu:RCOM_1242840
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002516677.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q9M3A8
description Pentatricopeptide repeat-containing protein At3g49240 OS=Arabidopsis thaliana GN=EMB1796 PE=2 SV=1
trembl
ID B9RSF8
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1242840 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein at3g49240-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003506_050 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_007545_130 0.0551158428 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
3 Hb_002600_060 0.074622406 - - PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]
4 Hb_000925_090 0.0751977899 - - PREDICTED: uncharacterized protein LOC105635805 isoform X1 [Jatropha curcas]
5 Hb_000331_560 0.077173194 transcription factor TF Family: C2H2 PREDICTED: lysine-specific demethylase REF6 [Jatropha curcas]
6 Hb_006618_050 0.079437473 - - PREDICTED: elongation factor G-2, chloroplastic [Jatropha curcas]
7 Hb_005250_030 0.0883236267 - - PREDICTED: uncharacterized protein LOC105640177 [Jatropha curcas]
8 Hb_003124_100 0.0884793301 - - -
9 Hb_013459_010 0.0900898571 - - PREDICTED: uncharacterized protein LOC101491556 isoform X2 [Cicer arietinum]
10 Hb_099270_030 0.0904438116 transcription factor TF Family: PHD PREDICTED: protein CHROMATIN REMODELING 4 isoform X2 [Jatropha curcas]
11 Hb_005348_010 0.0908244263 - - conserved hypothetical protein [Ricinus communis]
12 Hb_006295_020 0.0930481859 - - PREDICTED: serine/threonine-protein kinase ATR isoform X1 [Jatropha curcas]
13 Hb_000329_750 0.0956664468 - - PREDICTED: uncharacterized protein LOC105643205 [Jatropha curcas]
14 Hb_003203_030 0.0960004926 - - PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Jatropha curcas]
15 Hb_001133_030 0.0964048966 - - PREDICTED: MAG2-interacting protein 2-like [Jatropha curcas]
16 Hb_000714_040 0.0969965651 - - PREDICTED: uncharacterized protein LOC105634664 isoform X2 [Jatropha curcas]
17 Hb_000815_170 0.097090254 - - PREDICTED: uncharacterized protein PFB0145c [Jatropha curcas]
18 Hb_002391_050 0.0973796797 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17670 [Jatropha curcas]
19 Hb_000083_070 0.099493905 - - PREDICTED: transcription initiation factor TFIID subunit 1 isoform X2 [Jatropha curcas]
20 Hb_156279_010 0.1012749249 transcription factor TF Family: Jumonji PREDICTED: uncharacterized protein LOC105641053 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003506_050 Hb_003506_050 Hb_007545_130 Hb_007545_130 Hb_003506_050--Hb_007545_130 Hb_002600_060 Hb_002600_060 Hb_003506_050--Hb_002600_060 Hb_000925_090 Hb_000925_090 Hb_003506_050--Hb_000925_090 Hb_000331_560 Hb_000331_560 Hb_003506_050--Hb_000331_560 Hb_006618_050 Hb_006618_050 Hb_003506_050--Hb_006618_050 Hb_005250_030 Hb_005250_030 Hb_003506_050--Hb_005250_030 Hb_013459_010 Hb_013459_010 Hb_007545_130--Hb_013459_010 Hb_007545_130--Hb_005250_030 Hb_007545_130--Hb_000925_090 Hb_007545_130--Hb_002600_060 Hb_005211_020 Hb_005211_020 Hb_007545_130--Hb_005211_020 Hb_002600_060--Hb_000331_560 Hb_002600_060--Hb_000925_090 Hb_002600_060--Hb_005211_020 Hb_001133_030 Hb_001133_030 Hb_002600_060--Hb_001133_030 Hb_005488_170 Hb_005488_170 Hb_002600_060--Hb_005488_170 Hb_000083_070 Hb_000083_070 Hb_002600_060--Hb_000083_070 Hb_000925_090--Hb_001133_030 Hb_012244_020 Hb_012244_020 Hb_000925_090--Hb_012244_020 Hb_000925_090--Hb_000083_070 Hb_009486_170 Hb_009486_170 Hb_000925_090--Hb_009486_170 Hb_001726_100 Hb_001726_100 Hb_000925_090--Hb_001726_100 Hb_003203_030 Hb_003203_030 Hb_000331_560--Hb_003203_030 Hb_018118_010 Hb_018118_010 Hb_000331_560--Hb_018118_010 Hb_000300_120 Hb_000300_120 Hb_000331_560--Hb_000300_120 Hb_009252_040 Hb_009252_040 Hb_000331_560--Hb_009252_040 Hb_006618_050--Hb_005250_030 Hb_006618_050--Hb_007545_130 Hb_000815_170 Hb_000815_170 Hb_006618_050--Hb_000815_170 Hb_156279_010 Hb_156279_010 Hb_006618_050--Hb_156279_010 Hb_002368_070 Hb_002368_070 Hb_006618_050--Hb_002368_070 Hb_005250_030--Hb_000815_170 Hb_005250_030--Hb_013459_010 Hb_005250_030--Hb_156279_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.7036 25.6909 12.8549 11.1273 17.4034 21.6415
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.8264 7.07981 11.5912 17.259 44.9549

CAGE analysis