Hb_002368_070

Information

Type -
Description -
Location Contig2368: 105823-110260
Sequence    

Annotation

kegg
ID rcu:RCOM_0629260
description hypothetical protein
nr
ID XP_012072259.1
description PREDICTED: uncharacterized protein LOC105634087 [Jatropha curcas]
swissprot
ID Q8GUG9
description U-box domain-containing protein 11 OS=Arabidopsis thaliana GN=PUB11 PE=2 SV=2
trembl
ID A0A067KSW5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04726 PE=4 SV=1
Gene Ontology
ID GO:0005515
description armadillo beta-catenin repeat family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24770: 106634-108958 , PASA_asmbl_24771: 109023-109889 , PASA_asmbl_24772: 110173-119506
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002368_070 0.0 - - PREDICTED: uncharacterized protein LOC105634087 [Jatropha curcas]
2 Hb_006618_050 0.0903310506 - - PREDICTED: elongation factor G-2, chloroplastic [Jatropha curcas]
3 Hb_011931_060 0.0929115609 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP62-like [Jatropha curcas]
4 Hb_005250_030 0.1096043404 - - PREDICTED: uncharacterized protein LOC105640177 [Jatropha curcas]
5 Hb_002636_110 0.1115911274 - - PREDICTED: heat shock protein 83-like isoform X2 [Gossypium raimondii]
6 Hb_001623_280 0.1151940794 - - PREDICTED: chaperonin CPN60-2, mitochondrial [Jatropha curcas]
7 Hb_031658_040 0.1184540054 - - -
8 Hb_002233_130 0.1189303467 - - transporter, putative [Ricinus communis]
9 Hb_007545_130 0.119470079 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
10 Hb_002276_070 0.1200237318 - - PREDICTED: heat shock protein 83 [Jatropha curcas]
11 Hb_065408_010 0.1228696733 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Jatropha curcas]
12 Hb_002495_060 0.1233068808 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_005211_020 0.1273608012 - - PREDICTED: serine/threonine-protein kinase prpf4B-like isoform X1 [Jatropha curcas]
14 Hb_000714_040 0.1286350883 - - PREDICTED: uncharacterized protein LOC105634664 isoform X2 [Jatropha curcas]
15 Hb_003900_030 0.1314004214 - - PREDICTED: pentatricopeptide repeat-containing protein At2g41720 isoform X1 [Jatropha curcas]
16 Hb_000260_560 0.1331108034 - - PREDICTED: pentatricopeptide repeat-containing protein At3g18110, chloroplastic [Jatropha curcas]
17 Hb_003058_020 0.1333140056 - - PREDICTED: proteinaceous RNase P 1, chloroplastic/mitochondrial-like [Jatropha curcas]
18 Hb_000349_240 0.1341344105 - - PREDICTED: probable aminotransferase ACS10 isoform X1 [Jatropha curcas]
19 Hb_001437_120 0.1342506184 - - PREDICTED: ruBisCO large subunit-binding protein subunit alpha [Jatropha curcas]
20 Hb_000479_170 0.1344253159 - - chaperone clpb, putative [Ricinus communis]

Gene co-expression network

sample Hb_002368_070 Hb_002368_070 Hb_006618_050 Hb_006618_050 Hb_002368_070--Hb_006618_050 Hb_011931_060 Hb_011931_060 Hb_002368_070--Hb_011931_060 Hb_005250_030 Hb_005250_030 Hb_002368_070--Hb_005250_030 Hb_002636_110 Hb_002636_110 Hb_002368_070--Hb_002636_110 Hb_001623_280 Hb_001623_280 Hb_002368_070--Hb_001623_280 Hb_031658_040 Hb_031658_040 Hb_002368_070--Hb_031658_040 Hb_003506_050 Hb_003506_050 Hb_006618_050--Hb_003506_050 Hb_006618_050--Hb_005250_030 Hb_007545_130 Hb_007545_130 Hb_006618_050--Hb_007545_130 Hb_000815_170 Hb_000815_170 Hb_006618_050--Hb_000815_170 Hb_156279_010 Hb_156279_010 Hb_006618_050--Hb_156279_010 Hb_000479_170 Hb_000479_170 Hb_011931_060--Hb_000479_170 Hb_000816_100 Hb_000816_100 Hb_011931_060--Hb_000816_100 Hb_000958_070 Hb_000958_070 Hb_011931_060--Hb_000958_070 Hb_000331_560 Hb_000331_560 Hb_011931_060--Hb_000331_560 Hb_000033_110 Hb_000033_110 Hb_011931_060--Hb_000033_110 Hb_005250_030--Hb_007545_130 Hb_005250_030--Hb_000815_170 Hb_013459_010 Hb_013459_010 Hb_005250_030--Hb_013459_010 Hb_005250_030--Hb_156279_010 Hb_005250_030--Hb_003506_050 Hb_003119_080 Hb_003119_080 Hb_002636_110--Hb_003119_080 Hb_002600_060 Hb_002600_060 Hb_002636_110--Hb_002600_060 Hb_065408_010 Hb_065408_010 Hb_002636_110--Hb_065408_010 Hb_001789_040 Hb_001789_040 Hb_002636_110--Hb_001789_040 Hb_002909_120 Hb_002909_120 Hb_002636_110--Hb_002909_120 Hb_000608_300 Hb_000608_300 Hb_002636_110--Hb_000608_300 Hb_001623_280--Hb_000815_170 Hb_001623_280--Hb_000608_300 Hb_026053_040 Hb_026053_040 Hb_001623_280--Hb_026053_040 Hb_000025_270 Hb_000025_270 Hb_001623_280--Hb_000025_270 Hb_004306_030 Hb_004306_030 Hb_001623_280--Hb_004306_030 Hb_004724_410 Hb_004724_410 Hb_001623_280--Hb_004724_410 Hb_031658_040--Hb_006618_050 Hb_031658_040--Hb_065408_010 Hb_031658_040--Hb_003506_050 Hb_001366_160 Hb_001366_160 Hb_031658_040--Hb_001366_160 Hb_015026_080 Hb_015026_080 Hb_031658_040--Hb_015026_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.22664 4.58449 4.2067 1.83843 7.45389 4.96135
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.04504 1.05204 2.06513 4.7666 13.6303

CAGE analysis