Hb_001366_160

Information

Type -
Description -
Location Contig1366: 127748-130818
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10079: 127755-130902
cDNA
(Sanger)
(ID:Location)		 015_F12.ab1: 129832-130499

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001366_160 0.0 - - -
2 Hb_031658_040 0.1363731631 - - -
3 Hb_001766_040 0.1394514976 - - chaperone clpb, putative [Ricinus communis]
4 Hb_000139_150 0.153981104 - - transposon protein, putative, Mutator sub-class [Oryza sativa Japonica Group]
5 Hb_002368_070 0.1670009691 - - PREDICTED: uncharacterized protein LOC105634087 [Jatropha curcas]
6 Hb_065408_010 0.1697126113 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Jatropha curcas]
7 Hb_015026_080 0.1719193865 - - -
8 Hb_004785_070 0.1745291232 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X2 [Jatropha curcas]
9 Hb_002276_070 0.1838515024 - - PREDICTED: heat shock protein 83 [Jatropha curcas]
10 Hb_000345_330 0.1872072768 desease resistance Gene Name: NB-ARC NB-ARC domain-containing disease resistance-like protein isoform 1 [Theobroma cacao]
11 Hb_001009_100 0.1887542671 - - -
12 Hb_011931_060 0.1935941479 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP62-like [Jatropha curcas]
13 Hb_008123_010 0.193972188 - - -
14 Hb_003388_030 0.1970012636 - - PREDICTED: uncharacterized protein LOC105649746 isoform X1 [Jatropha curcas]
15 Hb_002636_110 0.1978998458 - - PREDICTED: heat shock protein 83-like isoform X2 [Gossypium raimondii]
16 Hb_006618_050 0.1999551531 - - PREDICTED: elongation factor G-2, chloroplastic [Jatropha curcas]
17 Hb_143629_140 0.2048573163 - - Ran GTPase binding protein, putative [Ricinus communis]
18 Hb_007545_130 0.2052774982 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
19 Hb_002942_130 0.2068464824 - - PREDICTED: chaperone protein ClpC, chloroplastic [Jatropha curcas]
20 Hb_002495_060 0.2086191364 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001366_160 Hb_001366_160 Hb_031658_040 Hb_031658_040 Hb_001366_160--Hb_031658_040 Hb_001766_040 Hb_001766_040 Hb_001366_160--Hb_001766_040 Hb_000139_150 Hb_000139_150 Hb_001366_160--Hb_000139_150 Hb_002368_070 Hb_002368_070 Hb_001366_160--Hb_002368_070 Hb_065408_010 Hb_065408_010 Hb_001366_160--Hb_065408_010 Hb_015026_080 Hb_015026_080 Hb_001366_160--Hb_015026_080 Hb_006618_050 Hb_006618_050 Hb_031658_040--Hb_006618_050 Hb_031658_040--Hb_002368_070 Hb_031658_040--Hb_065408_010 Hb_003506_050 Hb_003506_050 Hb_031658_040--Hb_003506_050 Hb_031658_040--Hb_015026_080 Hb_000062_110 Hb_000062_110 Hb_001766_040--Hb_000062_110 Hb_006573_010 Hb_006573_010 Hb_001766_040--Hb_006573_010 Hb_010407_190 Hb_010407_190 Hb_001766_040--Hb_010407_190 Hb_005962_010 Hb_005962_010 Hb_001766_040--Hb_005962_010 Hb_001766_040--Hb_002368_070 Hb_001009_100 Hb_001009_100 Hb_000139_150--Hb_001009_100 Hb_000139_150--Hb_031658_040 Hb_000139_150--Hb_065408_010 Hb_003388_030 Hb_003388_030 Hb_000139_150--Hb_003388_030 Hb_004884_020 Hb_004884_020 Hb_000139_150--Hb_004884_020 Hb_002368_070--Hb_006618_050 Hb_011931_060 Hb_011931_060 Hb_002368_070--Hb_011931_060 Hb_005250_030 Hb_005250_030 Hb_002368_070--Hb_005250_030 Hb_002636_110 Hb_002636_110 Hb_002368_070--Hb_002636_110 Hb_001623_280 Hb_001623_280 Hb_002368_070--Hb_001623_280 Hb_007120_060 Hb_007120_060 Hb_065408_010--Hb_007120_060 Hb_005211_020 Hb_005211_020 Hb_065408_010--Hb_005211_020 Hb_065408_010--Hb_002636_110 Hb_001726_100 Hb_001726_100 Hb_065408_010--Hb_001726_100 Hb_000925_090 Hb_000925_090 Hb_065408_010--Hb_000925_090 Hb_001085_030 Hb_001085_030 Hb_065408_010--Hb_001085_030 Hb_001832_040 Hb_001832_040 Hb_015026_080--Hb_001832_040 Hb_002518_120 Hb_002518_120 Hb_015026_080--Hb_002518_120 Hb_000087_140 Hb_000087_140 Hb_015026_080--Hb_000087_140 Hb_015026_080--Hb_005250_030 Hb_000349_240 Hb_000349_240 Hb_015026_080--Hb_000349_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.02791 18.7536 3.37171 2.94273 17.5195 12.3763
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.2494 1.96231 1.247 9.76581 40.373

CAGE analysis