Hb_000349_240

Information

Type -
Description -
Location Contig349: 250497-253851
Sequence    

Annotation

kegg
ID rcu:RCOM_1681460
description acc synthase, putative (EC:4.4.1.14)
nr
ID XP_012087060.1
description PREDICTED: probable aminotransferase ACS10 isoform X1 [Jatropha curcas]
swissprot
ID Q9LQ10
description Probable aminotransferase ACS10 OS=Arabidopsis thaliana GN=ACS10 PE=1 SV=1
trembl
ID B9RBW1
description Acc synthase, putative OS=Ricinus communis GN=RCOM_1681460 PE=4 SV=1
Gene Ontology
ID GO:0004069
description probable aminotransferase acs10

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36315: 250795-252647
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000349_240 0.0 - - PREDICTED: probable aminotransferase ACS10 isoform X1 [Jatropha curcas]
2 Hb_001790_080 0.0704672566 - - PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic isoform X3 [Jatropha curcas]
3 Hb_018118_010 0.0844536757 - - DNA polymerase I, putative [Ricinus communis]
4 Hb_009252_040 0.0888056045 - - PREDICTED: protein EXECUTER 2, chloroplastic [Jatropha curcas]
5 Hb_000087_140 0.0950946612 - - PREDICTED: pentatricopeptide repeat-containing protein At5g27270 isoform X1 [Jatropha curcas]
6 Hb_000033_110 0.097140305 - - hypothetical protein JCGZ_19253 [Jatropha curcas]
7 Hb_000007_010 0.0974522493 - - PREDICTED: protein PHYLLO, chloroplastic [Jatropha curcas]
8 Hb_000130_320 0.0990371345 desease resistance Gene Name: AAA PREDICTED: uncharacterized protein ycf45 [Jatropha curcas]
9 Hb_013405_080 0.1020898274 - - PREDICTED: proline--tRNA ligase [Jatropha curcas]
10 Hb_000331_560 0.1038901658 transcription factor TF Family: C2H2 PREDICTED: lysine-specific demethylase REF6 [Jatropha curcas]
11 Hb_001662_140 0.1039617939 - - PREDICTED: ankyrin repeat domain-containing protein, chloroplastic [Jatropha curcas]
12 Hb_002600_060 0.1050004755 - - PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]
13 Hb_029584_070 0.1070524428 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like [Jatropha curcas]
14 Hb_002233_130 0.1083062801 - - transporter, putative [Ricinus communis]
15 Hb_007545_130 0.1085482196 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
16 Hb_005250_030 0.108840822 - - PREDICTED: uncharacterized protein LOC105640177 [Jatropha curcas]
17 Hb_000331_130 0.1090686977 transcription factor TF Family: Trihelix conserved hypothetical protein [Ricinus communis]
18 Hb_001660_120 0.1103411532 - - PREDICTED: adenylate kinase, chloroplastic [Jatropha curcas]
19 Hb_001005_130 0.1107516126 - - PREDICTED: uncharacterized protein LOC105630220 isoform X4 [Jatropha curcas]
20 Hb_001832_040 0.1112113728 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000349_240 Hb_000349_240 Hb_001790_080 Hb_001790_080 Hb_000349_240--Hb_001790_080 Hb_018118_010 Hb_018118_010 Hb_000349_240--Hb_018118_010 Hb_009252_040 Hb_009252_040 Hb_000349_240--Hb_009252_040 Hb_000087_140 Hb_000087_140 Hb_000349_240--Hb_000087_140 Hb_000033_110 Hb_000033_110 Hb_000349_240--Hb_000033_110 Hb_000007_010 Hb_000007_010 Hb_000349_240--Hb_000007_010 Hb_000130_320 Hb_000130_320 Hb_001790_080--Hb_000130_320 Hb_029584_070 Hb_029584_070 Hb_001790_080--Hb_029584_070 Hb_001163_060 Hb_001163_060 Hb_001790_080--Hb_001163_060 Hb_003475_020 Hb_003475_020 Hb_001790_080--Hb_003475_020 Hb_001936_090 Hb_001936_090 Hb_001790_080--Hb_001936_090 Hb_000331_560 Hb_000331_560 Hb_018118_010--Hb_000331_560 Hb_000265_230 Hb_000265_230 Hb_018118_010--Hb_000265_230 Hb_003203_030 Hb_003203_030 Hb_018118_010--Hb_003203_030 Hb_018118_010--Hb_009252_040 Hb_000679_020 Hb_000679_020 Hb_018118_010--Hb_000679_020 Hb_004003_040 Hb_004003_040 Hb_018118_010--Hb_004003_040 Hb_000731_010 Hb_000731_010 Hb_009252_040--Hb_000731_010 Hb_009252_040--Hb_000033_110 Hb_000749_090 Hb_000749_090 Hb_009252_040--Hb_000749_090 Hb_013405_080 Hb_013405_080 Hb_009252_040--Hb_013405_080 Hb_009252_040--Hb_000331_560 Hb_000087_140--Hb_001790_080 Hb_036790_080 Hb_036790_080 Hb_000087_140--Hb_036790_080 Hb_000087_140--Hb_000130_320 Hb_001435_030 Hb_001435_030 Hb_000087_140--Hb_001435_030 Hb_003952_060 Hb_003952_060 Hb_000087_140--Hb_003952_060 Hb_000033_110--Hb_013405_080 Hb_000320_470 Hb_000320_470 Hb_000033_110--Hb_000320_470 Hb_000033_110--Hb_004003_040 Hb_026053_040 Hb_026053_040 Hb_000033_110--Hb_026053_040 Hb_000015_100 Hb_000015_100 Hb_000033_110--Hb_000015_100 Hb_001005_130 Hb_001005_130 Hb_000007_010--Hb_001005_130 Hb_000007_010--Hb_000749_090 Hb_000856_070 Hb_000856_070 Hb_000007_010--Hb_000856_070 Hb_001589_010 Hb_001589_010 Hb_000007_010--Hb_001589_010 Hb_000007_010--Hb_001790_080 Hb_000007_010--Hb_018118_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.10672 8.79974 8.33089 3.5758 7.20883 9.12686
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.13519 4.27717 4.71177 5.95221 20.5167

CAGE analysis