Hb_013405_080

Information

Type -
Description -
Location Contig13405: 41696-47453
Sequence    

Annotation

kegg
ID rcu:RCOM_1582810
description prolyl-tRNA synthetase, putative (EC:6.1.1.15)
nr
ID XP_012090203.1
description PREDICTED: proline--tRNA ligase [Jatropha curcas]
swissprot
ID A5UU62
description Proline--tRNA ligase OS=Roseiflexus sp. (strain RS-1) GN=proS PE=3 SV=1
trembl
ID A0A067JQI8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26071 PE=3 SV=1
Gene Ontology
ID GO:0005739
description proline--trna ligase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09661: 41812-46353 , PASA_asmbl_09662: 42243-46353 , PASA_asmbl_09663: 46567-47455 , PASA_asmbl_09664: 47901-48210 , PASA_asmbl_09665: 48400-48732
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013405_080 0.0 - - PREDICTED: proline--tRNA ligase [Jatropha curcas]
2 Hb_001660_120 0.054132632 - - PREDICTED: adenylate kinase, chloroplastic [Jatropha curcas]
3 Hb_025477_050 0.0561818737 - - ABC transporter family protein [Hevea brasiliensis]
4 Hb_000300_470 0.0665059203 - - PREDICTED: nucleolin-like [Jatropha curcas]
5 Hb_005250_010 0.070147443 - - hypothetical protein JCGZ_15339 [Jatropha curcas]
6 Hb_000033_110 0.0716320524 - - hypothetical protein JCGZ_19253 [Jatropha curcas]
7 Hb_000320_470 0.0765493435 - - calcium-dependent protein kinase [Hevea brasiliensis]
8 Hb_033312_010 0.0769996045 - - PREDICTED: valine--tRNA ligase, mitochondrial isoform X1 [Jatropha curcas]
9 Hb_009252_040 0.0795923976 - - PREDICTED: protein EXECUTER 2, chloroplastic [Jatropha curcas]
10 Hb_000130_320 0.0815243024 desease resistance Gene Name: AAA PREDICTED: uncharacterized protein ycf45 [Jatropha curcas]
11 Hb_002774_190 0.0817186408 - - Endoplasmic reticulum-Golgi intermediate compartment protein, putative [Ricinus communis]
12 Hb_026053_040 0.08204448 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000589_110 0.0844748855 - - PREDICTED: uncharacterized protein LOC105647614 isoform X1 [Jatropha curcas]
14 Hb_017469_110 0.0869787535 - - PREDICTED: uncharacterized protein LOC105641795 [Jatropha curcas]
15 Hb_007769_040 0.0874863487 - - PREDICTED: probable threonine--tRNA ligase, cytoplasmic [Jatropha curcas]
16 Hb_001472_160 0.0897211204 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
17 Hb_004003_040 0.0907379038 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
18 Hb_001790_080 0.0914053036 - - PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic isoform X3 [Jatropha curcas]
19 Hb_000237_200 0.0916058909 - - PREDICTED: SUMO-activating enzyme subunit 2 [Jatropha curcas]
20 Hb_002973_110 0.0922050004 - - ABC transporter family protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_013405_080 Hb_013405_080 Hb_001660_120 Hb_001660_120 Hb_013405_080--Hb_001660_120 Hb_025477_050 Hb_025477_050 Hb_013405_080--Hb_025477_050 Hb_000300_470 Hb_000300_470 Hb_013405_080--Hb_000300_470 Hb_005250_010 Hb_005250_010 Hb_013405_080--Hb_005250_010 Hb_000033_110 Hb_000033_110 Hb_013405_080--Hb_000033_110 Hb_000320_470 Hb_000320_470 Hb_013405_080--Hb_000320_470 Hb_001662_140 Hb_001662_140 Hb_001660_120--Hb_001662_140 Hb_000363_060 Hb_000363_060 Hb_001660_120--Hb_000363_060 Hb_000331_130 Hb_000331_130 Hb_001660_120--Hb_000331_130 Hb_000221_140 Hb_000221_140 Hb_001660_120--Hb_000221_140 Hb_033312_010 Hb_033312_010 Hb_001660_120--Hb_033312_010 Hb_007769_040 Hb_007769_040 Hb_025477_050--Hb_007769_040 Hb_001472_160 Hb_001472_160 Hb_025477_050--Hb_001472_160 Hb_000144_060 Hb_000144_060 Hb_025477_050--Hb_000144_060 Hb_000345_370 Hb_000345_370 Hb_025477_050--Hb_000345_370 Hb_025477_050--Hb_001660_120 Hb_005260_030 Hb_005260_030 Hb_000300_470--Hb_005260_030 Hb_000237_200 Hb_000237_200 Hb_000300_470--Hb_000237_200 Hb_002774_190 Hb_002774_190 Hb_000300_470--Hb_002774_190 Hb_000046_540 Hb_000046_540 Hb_000300_470--Hb_000046_540 Hb_004218_190 Hb_004218_190 Hb_000300_470--Hb_004218_190 Hb_005250_010--Hb_025477_050 Hb_005914_040 Hb_005914_040 Hb_005250_010--Hb_005914_040 Hb_005250_010--Hb_004218_190 Hb_026053_040 Hb_026053_040 Hb_005250_010--Hb_026053_040 Hb_005250_010--Hb_000033_110 Hb_009252_040 Hb_009252_040 Hb_000033_110--Hb_009252_040 Hb_000033_110--Hb_000320_470 Hb_004003_040 Hb_004003_040 Hb_000033_110--Hb_004003_040 Hb_000033_110--Hb_026053_040 Hb_000015_100 Hb_000015_100 Hb_000033_110--Hb_000015_100 Hb_000181_100 Hb_000181_100 Hb_000320_470--Hb_000181_100 Hb_000320_470--Hb_026053_040 Hb_001008_050 Hb_001008_050 Hb_000320_470--Hb_001008_050 Hb_001008_070 Hb_001008_070 Hb_000320_470--Hb_001008_070 Hb_031091_020 Hb_031091_020 Hb_000320_470--Hb_031091_020 Hb_089246_010 Hb_089246_010 Hb_000320_470--Hb_089246_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.31602 6.71105 10.4984 7.93327 6.69843 8.19735
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.45316 4.73878 4.28379 6.4495 19.8995

CAGE analysis