Hb_000300_470

Information

Type -
Description -
Location Contig300: 419092-426355
Sequence    

Annotation

kegg
ID rcu:RCOM_1321900
description hypothetical protein
nr
ID XP_012070417.1
description PREDICTED: nucleolin-like [Jatropha curcas]
swissprot
ID Q7TP47
description Heterogeneous nuclear ribonucleoprotein Q OS=Rattus norvegicus GN=Syncrip PE=2 SV=1
trembl
ID A0A067L5A6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02695 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31601: 419188-426350 , PASA_asmbl_31602: 421688-421851
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000300_470 0.0 - - PREDICTED: nucleolin-like [Jatropha curcas]
2 Hb_013405_080 0.0665059203 - - PREDICTED: proline--tRNA ligase [Jatropha curcas]
3 Hb_005260_030 0.0717844389 - - PREDICTED: uncharacterized protein LOC105633782 [Jatropha curcas]
4 Hb_000237_200 0.0745376323 - - PREDICTED: SUMO-activating enzyme subunit 2 [Jatropha curcas]
5 Hb_002774_190 0.0789181929 - - Endoplasmic reticulum-Golgi intermediate compartment protein, putative [Ricinus communis]
6 Hb_000046_540 0.0792567722 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Populus euphratica]
7 Hb_004218_190 0.0795612942 transcription factor TF Family: SNF2 PREDICTED: F-box protein At3g54460 isoform X1 [Jatropha curcas]
8 Hb_017469_110 0.0825819492 - - PREDICTED: uncharacterized protein LOC105641795 [Jatropha curcas]
9 Hb_026053_040 0.086133865 - - conserved hypothetical protein [Ricinus communis]
10 Hb_005489_040 0.0872069399 - - PREDICTED: cullin-1 [Jatropha curcas]
11 Hb_002027_080 0.0879171625 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105650047 [Jatropha curcas]
12 Hb_073171_070 0.0881949098 - - PREDICTED: RNA polymerase II-associated factor 1 homolog [Jatropha curcas]
13 Hb_005250_010 0.0885474786 - - hypothetical protein JCGZ_15339 [Jatropha curcas]
14 Hb_008705_020 0.0896328853 - - PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog isoform X1 [Jatropha curcas]
15 Hb_007012_030 0.0900564181 - - PREDICTED: transmembrane and coiled-coil domain-containing protein 4-like isoform X1 [Jatropha curcas]
16 Hb_000320_470 0.090391811 - - calcium-dependent protein kinase [Hevea brasiliensis]
17 Hb_007413_010 0.0913892017 - - PREDICTED: SUMO-activating enzyme subunit 2 [Jatropha curcas]
18 Hb_013459_020 0.091533341 - - PREDICTED: uncharacterized protein LOC105628886 [Jatropha curcas]
19 Hb_010863_050 0.0915401412 - - OTU domain-containing protein 6B, putative [Ricinus communis]
20 Hb_001163_060 0.0918624323 - - neutral/alkaline invertase [Manihot esculenta]

Gene co-expression network

sample Hb_000300_470 Hb_000300_470 Hb_013405_080 Hb_013405_080 Hb_000300_470--Hb_013405_080 Hb_005260_030 Hb_005260_030 Hb_000300_470--Hb_005260_030 Hb_000237_200 Hb_000237_200 Hb_000300_470--Hb_000237_200 Hb_002774_190 Hb_002774_190 Hb_000300_470--Hb_002774_190 Hb_000046_540 Hb_000046_540 Hb_000300_470--Hb_000046_540 Hb_004218_190 Hb_004218_190 Hb_000300_470--Hb_004218_190 Hb_001660_120 Hb_001660_120 Hb_013405_080--Hb_001660_120 Hb_025477_050 Hb_025477_050 Hb_013405_080--Hb_025477_050 Hb_005250_010 Hb_005250_010 Hb_013405_080--Hb_005250_010 Hb_000033_110 Hb_000033_110 Hb_013405_080--Hb_000033_110 Hb_000320_470 Hb_000320_470 Hb_013405_080--Hb_000320_470 Hb_005489_040 Hb_005489_040 Hb_005260_030--Hb_005489_040 Hb_007413_010 Hb_007413_010 Hb_005260_030--Hb_007413_010 Hb_073171_070 Hb_073171_070 Hb_005260_030--Hb_073171_070 Hb_003117_030 Hb_003117_030 Hb_005260_030--Hb_003117_030 Hb_017469_110 Hb_017469_110 Hb_005260_030--Hb_017469_110 Hb_000270_170 Hb_000270_170 Hb_005260_030--Hb_000270_170 Hb_021374_030 Hb_021374_030 Hb_000237_200--Hb_021374_030 Hb_000035_090 Hb_000035_090 Hb_000237_200--Hb_000035_090 Hb_002876_300 Hb_002876_300 Hb_000237_200--Hb_002876_300 Hb_114310_070 Hb_114310_070 Hb_000237_200--Hb_114310_070 Hb_000237_200--Hb_002774_190 Hb_000212_120 Hb_000212_120 Hb_002774_190--Hb_000212_120 Hb_028487_070 Hb_028487_070 Hb_002774_190--Hb_028487_070 Hb_032202_220 Hb_032202_220 Hb_002774_190--Hb_032202_220 Hb_134849_010 Hb_134849_010 Hb_002774_190--Hb_134849_010 Hb_000375_390 Hb_000375_390 Hb_002774_190--Hb_000375_390 Hb_000061_180 Hb_000061_180 Hb_002774_190--Hb_000061_180 Hb_002078_340 Hb_002078_340 Hb_000046_540--Hb_002078_340 Hb_002025_250 Hb_002025_250 Hb_000046_540--Hb_002025_250 Hb_000078_140 Hb_000078_140 Hb_000046_540--Hb_000078_140 Hb_001195_400 Hb_001195_400 Hb_000046_540--Hb_001195_400 Hb_002769_030 Hb_002769_030 Hb_000046_540--Hb_002769_030 Hb_000365_240 Hb_000365_240 Hb_004218_190--Hb_000365_240 Hb_004218_190--Hb_005250_010 Hb_004218_190--Hb_000046_540 Hb_007101_080 Hb_007101_080 Hb_004218_190--Hb_007101_080 Hb_011377_040 Hb_011377_040 Hb_004218_190--Hb_011377_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.29744 6.182 11.2817 7.80805 5.70721 7.35356
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.07836 4.71827 5.32683 8.6206 18.0073

CAGE analysis