Hb_002078_340

Information

Type -
Description -
Location Contig2078: 232973-238410
Sequence    

Annotation

kegg
ID rcu:RCOM_1079900
description yth domain-containing protein, putative
nr
ID XP_012085690.1
description PREDICTED: uncharacterized protein LOC105644820 isoform X2 [Jatropha curcas]
swissprot
ID Q91YT7
description YTH domain-containing family protein 2 OS=Mus musculus GN=Ythdf2 PE=2 SV=1
trembl
ID A0A067JS81
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17969 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21458: 232998-238450 , PASA_asmbl_21459: 235905-238074 , PASA_asmbl_21460: 235905-238352
cDNA
(Sanger)
(ID:Location)		 024_I10.ab1: 237475-238448

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002078_340 0.0 - - PREDICTED: uncharacterized protein LOC105644820 isoform X2 [Jatropha curcas]
2 Hb_000046_540 0.0531616251 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Populus euphratica]
3 Hb_000482_040 0.0788563256 - - Protein YME1, putative [Ricinus communis]
4 Hb_012150_030 0.0788698948 - - PREDICTED: aspartate--tRNA ligase, mitochondrial [Jatropha curcas]
5 Hb_003153_010 0.0825126235 - - PREDICTED: diacylglycerol kinase 3-like [Jatropha curcas]
6 Hb_003376_230 0.082639262 - - PREDICTED: dnaJ protein P58IPK homolog [Jatropha curcas]
7 Hb_000364_050 0.0846585483 - - PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]
8 Hb_001195_400 0.0849184507 - - glucose-6-phosphate isomerase, putative [Ricinus communis]
9 Hb_006059_030 0.0852074239 - - glutamate dehydrogenase, putative [Ricinus communis]
10 Hb_001163_060 0.0852438897 - - neutral/alkaline invertase [Manihot esculenta]
11 Hb_002025_250 0.0854140858 - - PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3 [Jatropha curcas]
12 Hb_000077_150 0.0855300399 - - PREDICTED: riboflavin synthase [Jatropha curcas]
13 Hb_000107_430 0.0858488794 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 1 [Jatropha curcas]
14 Hb_002769_030 0.0859653507 - - PREDICTED: MATE efflux family protein 4, chloroplastic-like [Jatropha curcas]
15 Hb_003053_110 0.086439667 - - PREDICTED: protease Do-like 1, chloroplastic [Jatropha curcas]
16 Hb_035273_020 0.0881418814 - - PREDICTED: amidase 1-like isoform X1 [Jatropha curcas]
17 Hb_001629_030 0.0887689362 - - PAP-specific phosphatase HAL2-like family protein [Populus trichocarpa]
18 Hb_004108_160 0.0894991912 - - PREDICTED: myosin heavy chain, non-muscle-like [Jatropha curcas]
19 Hb_010863_050 0.0896335841 - - OTU domain-containing protein 6B, putative [Ricinus communis]
20 Hb_001195_450 0.089888395 - - PREDICTED: uncharacterized protein LOC105633771 [Jatropha curcas]

Gene co-expression network

sample Hb_002078_340 Hb_002078_340 Hb_000046_540 Hb_000046_540 Hb_002078_340--Hb_000046_540 Hb_000482_040 Hb_000482_040 Hb_002078_340--Hb_000482_040 Hb_012150_030 Hb_012150_030 Hb_002078_340--Hb_012150_030 Hb_003153_010 Hb_003153_010 Hb_002078_340--Hb_003153_010 Hb_003376_230 Hb_003376_230 Hb_002078_340--Hb_003376_230 Hb_000364_050 Hb_000364_050 Hb_002078_340--Hb_000364_050 Hb_002025_250 Hb_002025_250 Hb_000046_540--Hb_002025_250 Hb_000078_140 Hb_000078_140 Hb_000046_540--Hb_000078_140 Hb_001195_400 Hb_001195_400 Hb_000046_540--Hb_001195_400 Hb_002769_030 Hb_002769_030 Hb_000046_540--Hb_002769_030 Hb_000300_470 Hb_000300_470 Hb_000046_540--Hb_000300_470 Hb_009778_060 Hb_009778_060 Hb_000482_040--Hb_009778_060 Hb_002686_090 Hb_002686_090 Hb_000482_040--Hb_002686_090 Hb_000635_060 Hb_000635_060 Hb_000482_040--Hb_000635_060 Hb_005116_050 Hb_005116_050 Hb_000482_040--Hb_005116_050 Hb_001163_060 Hb_001163_060 Hb_000482_040--Hb_001163_060 Hb_003053_110 Hb_003053_110 Hb_012150_030--Hb_003053_110 Hb_004452_120 Hb_004452_120 Hb_012150_030--Hb_004452_120 Hb_010863_050 Hb_010863_050 Hb_012150_030--Hb_010863_050 Hb_134849_010 Hb_134849_010 Hb_012150_030--Hb_134849_010 Hb_048093_010 Hb_048093_010 Hb_012150_030--Hb_048093_010 Hb_000941_100 Hb_000941_100 Hb_012150_030--Hb_000941_100 Hb_004108_160 Hb_004108_160 Hb_003153_010--Hb_004108_160 Hb_000556_090 Hb_000556_090 Hb_003153_010--Hb_000556_090 Hb_003153_010--Hb_003376_230 Hb_003153_010--Hb_002769_030 Hb_008421_020 Hb_008421_020 Hb_003153_010--Hb_008421_020 Hb_000184_170 Hb_000184_170 Hb_003153_010--Hb_000184_170 Hb_000212_440 Hb_000212_440 Hb_003376_230--Hb_000212_440 Hb_011512_110 Hb_011512_110 Hb_003376_230--Hb_011512_110 Hb_000172_580 Hb_000172_580 Hb_003376_230--Hb_000172_580 Hb_001584_200 Hb_001584_200 Hb_003376_230--Hb_001584_200 Hb_005405_020 Hb_005405_020 Hb_003376_230--Hb_005405_020 Hb_007904_230 Hb_007904_230 Hb_000364_050--Hb_007904_230 Hb_000364_050--Hb_004452_120 Hb_001269_130 Hb_001269_130 Hb_000364_050--Hb_001269_130 Hb_012733_040 Hb_012733_040 Hb_000364_050--Hb_012733_040 Hb_006059_030 Hb_006059_030 Hb_000364_050--Hb_006059_030 Hb_000364_050--Hb_010863_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.74398 6.3124 12.5603 10.7871 6.86035 7.15778
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.49519 9.88889 11.9869 12.0909 24.3759

CAGE analysis