Hb_005116_050

Information

Type -
Description -
Location Contig5116: 70078-72652
Sequence    

Annotation

kegg
ID vvi:100264809
description pentatricopeptide repeat-containing protein At4g02820, mitochondrial
nr
ID XP_012092255.1
description PREDICTED: pentatricopeptide repeat-containing protein At4g02820, mitochondrial isoform X1 [Jatropha curcas]
swissprot
ID Q9SY07
description Pentatricopeptide repeat-containing protein At4g02820, mitochondrial OS=Arabidopsis thaliana GN=At4g02820 PE=2 SV=1
trembl
ID A0A067JCD4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21938 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46344: 70117-72326
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005116_050 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02820, mitochondrial isoform X1 [Jatropha curcas]
2 Hb_000130_220 0.0649825457 - - PREDICTED: uncharacterized protein At3g15000, mitochondrial-like [Jatropha curcas]
3 Hb_001157_240 0.0786223132 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Jatropha curcas]
4 Hb_000482_040 0.079929899 - - Protein YME1, putative [Ricinus communis]
5 Hb_001163_060 0.0812554028 - - neutral/alkaline invertase [Manihot esculenta]
6 Hb_008033_040 0.0817809507 - - PREDICTED: MATE efflux family protein 3, chloroplastic [Jatropha curcas]
7 Hb_005736_020 0.0820913193 - - hypothetical protein POPTR_0005s20940g [Populus trichocarpa]
8 Hb_001304_110 0.08245533 transcription factor TF Family: WRKY WRKY protein [Hevea brasiliensis]
9 Hb_001589_010 0.0827620208 - - PREDICTED: uncharacterized protein LOC105638192 isoform X1 [Jatropha curcas]
10 Hb_009486_140 0.0827861827 - - PREDICTED: uncharacterized protein LOC105643248 [Jatropha curcas]
11 Hb_000640_040 0.0827886716 - - PREDICTED: bromodomain and WD repeat-containing protein 1 isoform X2 [Jatropha curcas]
12 Hb_005686_090 0.0861423322 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 2 isoform X1 [Jatropha curcas]
13 Hb_000059_380 0.0872248929 - - PREDICTED: uncharacterized protein LOC105648668 [Jatropha curcas]
14 Hb_005253_030 0.0879819636 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_002758_010 0.0889751685 - - PREDICTED: ribonuclease II, chloroplastic/mitochondrial [Populus euphratica]
16 Hb_001008_120 0.0898753043 desease resistance Gene Name: PEX-1N peroxisome biogenesis factor, putative [Ricinus communis]
17 Hb_001671_010 0.0899755554 - - PREDICTED: U-box domain-containing protein 44-like [Jatropha curcas]
18 Hb_001999_290 0.0900333529 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 7, chloroplastic-like [Jatropha curcas]
19 Hb_002205_230 0.091870367 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]
20 Hb_000317_050 0.0925912894 - - formiminotransferase-cyclodeaminase, putative [Ricinus communis]

Gene co-expression network

sample Hb_005116_050 Hb_005116_050 Hb_000130_220 Hb_000130_220 Hb_005116_050--Hb_000130_220 Hb_001157_240 Hb_001157_240 Hb_005116_050--Hb_001157_240 Hb_000482_040 Hb_000482_040 Hb_005116_050--Hb_000482_040 Hb_001163_060 Hb_001163_060 Hb_005116_050--Hb_001163_060 Hb_008033_040 Hb_008033_040 Hb_005116_050--Hb_008033_040 Hb_005736_020 Hb_005736_020 Hb_005116_050--Hb_005736_020 Hb_001766_050 Hb_001766_050 Hb_000130_220--Hb_001766_050 Hb_000130_220--Hb_000482_040 Hb_000510_290 Hb_000510_290 Hb_000130_220--Hb_000510_290 Hb_001541_120 Hb_001541_120 Hb_000130_220--Hb_001541_120 Hb_000805_100 Hb_000805_100 Hb_000130_220--Hb_000805_100 Hb_001999_290 Hb_001999_290 Hb_001157_240--Hb_001999_290 Hb_003943_110 Hb_003943_110 Hb_001157_240--Hb_003943_110 Hb_001157_240--Hb_005736_020 Hb_005582_040 Hb_005582_040 Hb_001157_240--Hb_005582_040 Hb_000640_040 Hb_000640_040 Hb_001157_240--Hb_000640_040 Hb_001008_120 Hb_001008_120 Hb_001157_240--Hb_001008_120 Hb_009778_060 Hb_009778_060 Hb_000482_040--Hb_009778_060 Hb_002686_090 Hb_002686_090 Hb_000482_040--Hb_002686_090 Hb_000635_060 Hb_000635_060 Hb_000482_040--Hb_000635_060 Hb_002078_340 Hb_002078_340 Hb_000482_040--Hb_002078_340 Hb_000482_040--Hb_001163_060 Hb_000445_090 Hb_000445_090 Hb_001163_060--Hb_000445_090 Hb_000193_330 Hb_000193_330 Hb_001163_060--Hb_000193_330 Hb_002769_030 Hb_002769_030 Hb_001163_060--Hb_002769_030 Hb_000365_240 Hb_000365_240 Hb_001163_060--Hb_000365_240 Hb_000599_270 Hb_000599_270 Hb_001163_060--Hb_000599_270 Hb_004003_040 Hb_004003_040 Hb_001163_060--Hb_004003_040 Hb_001304_110 Hb_001304_110 Hb_008033_040--Hb_001304_110 Hb_008033_040--Hb_003943_110 Hb_027073_020 Hb_027073_020 Hb_008033_040--Hb_027073_020 Hb_001716_040 Hb_001716_040 Hb_008033_040--Hb_001716_040 Hb_001347_060 Hb_001347_060 Hb_008033_040--Hb_001347_060 Hb_000363_310 Hb_000363_310 Hb_008033_040--Hb_000363_310 Hb_005686_090 Hb_005686_090 Hb_005736_020--Hb_005686_090 Hb_005736_020--Hb_001999_290 Hb_001004_060 Hb_001004_060 Hb_005736_020--Hb_001004_060 Hb_005736_020--Hb_001008_120 Hb_000204_120 Hb_000204_120 Hb_005736_020--Hb_000204_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.68151 4.40283 3.71123 3.04808 3.19895 3.08546
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.21588 5.18219 5.04738 3.92405 8.59622

CAGE analysis