Hb_000365_240

Information

Type -
Description -
Location Contig365: 210711-226184
Sequence    

Annotation

kegg
ID pop:POPTR_0016s14910g
description POPTRDRAFT_835631; hypothetical protein
nr
ID XP_012090974.1
description PREDICTED: mediator of RNA polymerase II transcription subunit 33A-like [Jatropha curcas]
swissprot
ID Q9LUG9
description Mediator of RNA polymerase II transcription subunit 33A OS=Arabidopsis thaliana GN=MED33A PE=1 SV=1
trembl
ID B9IGY5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s14910g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37578: 202386-220229 , PASA_asmbl_37581: 212410-213815 , PASA_asmbl_37583: 222692-226028 , PASA_asmbl_37584: 221381-223005
cDNA
(Sanger)
(ID:Location)		 035_O22.ab1: 224847-226028 , 038_H11.ab1: 224854-226028

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000365_240 0.0 - - PREDICTED: mediator of RNA polymerase II transcription subunit 33A-like [Jatropha curcas]
2 Hb_002055_040 0.066301461 - - PREDICTED: large subunit GTPase 1 homolog [Jatropha curcas]
3 Hb_001163_060 0.0751530023 - - neutral/alkaline invertase [Manihot esculenta]
4 Hb_000922_030 0.076249851 - - PREDICTED: protein EXECUTER 2, chloroplastic [Jatropha curcas]
5 Hb_001157_240 0.0821121672 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Jatropha curcas]
6 Hb_002539_070 0.0839376887 - - PREDICTED: pentatricopeptide repeat-containing protein At1g26460, mitochondrial [Jatropha curcas]
7 Hb_004218_190 0.0844511014 transcription factor TF Family: SNF2 PREDICTED: F-box protein At3g54460 isoform X1 [Jatropha curcas]
8 Hb_000046_540 0.0851345949 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Populus euphratica]
9 Hb_007472_090 0.08558161 - - unnamed protein product [Coffea canephora]
10 Hb_000635_060 0.0867370284 - - PREDICTED: uncharacterized protein LOC105644797 [Jatropha curcas]
11 Hb_000204_120 0.0880889801 - - PREDICTED: uncharacterized protein LOC105639239 [Jatropha curcas]
12 Hb_002769_030 0.0888058395 - - PREDICTED: MATE efflux family protein 4, chloroplastic-like [Jatropha curcas]
13 Hb_004374_110 0.0897257347 - - PREDICTED: uncharacterized protein LOC105645768 [Jatropha curcas]
14 Hb_003607_070 0.0897321772 - - PREDICTED: pentatricopeptide repeat-containing protein At5g48910 [Jatropha curcas]
15 Hb_000039_150 0.090483214 - - PREDICTED: lysine-specific demethylase JMJ25 isoform X1 [Jatropha curcas]
16 Hb_000094_070 0.0922969302 - - PREDICTED: 5'-nucleotidase domain-containing protein 4 isoform X2 [Jatropha curcas]
17 Hb_135572_010 0.0923167499 - - GTP-binding protein alpha subunit, gna, putative [Ricinus communis]
18 Hb_000482_040 0.0936569828 - - Protein YME1, putative [Ricinus communis]
19 Hb_012098_070 0.0947572625 - - PREDICTED: uncharacterized protein LOC105633371 [Jatropha curcas]
20 Hb_006274_050 0.0959332994 - - hypothetical protein VITISV_022618 [Vitis vinifera]

Gene co-expression network

sample Hb_000365_240 Hb_000365_240 Hb_002055_040 Hb_002055_040 Hb_000365_240--Hb_002055_040 Hb_001163_060 Hb_001163_060 Hb_000365_240--Hb_001163_060 Hb_000922_030 Hb_000922_030 Hb_000365_240--Hb_000922_030 Hb_001157_240 Hb_001157_240 Hb_000365_240--Hb_001157_240 Hb_002539_070 Hb_002539_070 Hb_000365_240--Hb_002539_070 Hb_004218_190 Hb_004218_190 Hb_000365_240--Hb_004218_190 Hb_002099_080 Hb_002099_080 Hb_002055_040--Hb_002099_080 Hb_011228_010 Hb_011228_010 Hb_002055_040--Hb_011228_010 Hb_000039_150 Hb_000039_150 Hb_002055_040--Hb_000039_150 Hb_007820_010 Hb_007820_010 Hb_002055_040--Hb_007820_010 Hb_000388_090 Hb_000388_090 Hb_002055_040--Hb_000388_090 Hb_000445_090 Hb_000445_090 Hb_001163_060--Hb_000445_090 Hb_000193_330 Hb_000193_330 Hb_001163_060--Hb_000193_330 Hb_002769_030 Hb_002769_030 Hb_001163_060--Hb_002769_030 Hb_000599_270 Hb_000599_270 Hb_001163_060--Hb_000599_270 Hb_004003_040 Hb_004003_040 Hb_001163_060--Hb_004003_040 Hb_000358_050 Hb_000358_050 Hb_000922_030--Hb_000358_050 Hb_002025_330 Hb_002025_330 Hb_000922_030--Hb_002025_330 Hb_135572_010 Hb_135572_010 Hb_000922_030--Hb_135572_010 Hb_004143_160 Hb_004143_160 Hb_000922_030--Hb_004143_160 Hb_007472_090 Hb_007472_090 Hb_000922_030--Hb_007472_090 Hb_001999_290 Hb_001999_290 Hb_001157_240--Hb_001999_290 Hb_003943_110 Hb_003943_110 Hb_001157_240--Hb_003943_110 Hb_005736_020 Hb_005736_020 Hb_001157_240--Hb_005736_020 Hb_005582_040 Hb_005582_040 Hb_001157_240--Hb_005582_040 Hb_000640_040 Hb_000640_040 Hb_001157_240--Hb_000640_040 Hb_001008_120 Hb_001008_120 Hb_001157_240--Hb_001008_120 Hb_000635_060 Hb_000635_060 Hb_002539_070--Hb_000635_060 Hb_004374_110 Hb_004374_110 Hb_002539_070--Hb_004374_110 Hb_002539_070--Hb_003943_110 Hb_002539_070--Hb_000445_090 Hb_012632_010 Hb_012632_010 Hb_002539_070--Hb_012632_010 Hb_000300_470 Hb_000300_470 Hb_004218_190--Hb_000300_470 Hb_005250_010 Hb_005250_010 Hb_004218_190--Hb_005250_010 Hb_000046_540 Hb_000046_540 Hb_004218_190--Hb_000046_540 Hb_007101_080 Hb_007101_080 Hb_004218_190--Hb_007101_080 Hb_011377_040 Hb_011377_040 Hb_004218_190--Hb_011377_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.46633 2.94779 3.13292 2.71007 2.35261 2.90449
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.84904 1.99214 4.14137 4.09983 7.55282

CAGE analysis