Hb_007472_090

Information

Type -
Description -
Location Contig7472: 186988-188209
Sequence    

Annotation

kegg
ID cmo:103487621
description uncharacterized zinc finger CCHC domain-containing protein At4g19190
nr
ID CDP07186.1
description unnamed protein product [Coffea canephora]
swissprot
ID -
description -
trembl
ID A0A068UFG5
description Coffea canephora DH200=94 genomic scaffold, scaffold_25 OS=Coffea canephora GN=GSCOC_T00024351001 PE=4 SV=1
Gene Ontology
ID GO:0003676
description uncharacterized zinc finger cchc domain-containing protein at4g19190

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56698: 171908-188147
cDNA
(Sanger)
(ID:Location)		 016_K01.ab1: 187172-188147

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007472_090 0.0 - - unnamed protein product [Coffea canephora]
2 Hb_004208_050 0.0711795447 desease resistance Gene Name: CDC48_N cell division cycle protein 48 [Hevea brasiliensis]
3 Hb_000922_030 0.078972303 - - PREDICTED: protein EXECUTER 2, chloroplastic [Jatropha curcas]
4 Hb_002908_040 0.0794580934 - - DNA gyrase subunit A, chloroplast/mitochondrial precursor, putative [Ricinus communis]
5 Hb_002639_110 0.0801229382 - - hypothetical protein L484_011673 [Morus notabilis]
6 Hb_000358_050 0.0816740242 - - PREDICTED: uncharacterized protein LOC105633378 [Jatropha curcas]
7 Hb_007441_160 0.0820778481 - - RNA binding protein, putative [Ricinus communis]
8 Hb_135572_010 0.0829661 - - GTP-binding protein alpha subunit, gna, putative [Ricinus communis]
9 Hb_000261_480 0.085129296 - - 26S proteasome regulatory subunit family protein [Populus trichocarpa]
10 Hb_000365_240 0.08558161 - - PREDICTED: mediator of RNA polymerase II transcription subunit 33A-like [Jatropha curcas]
11 Hb_097185_010 0.0863895995 - - PREDICTED: uncharacterized protein LOC105644797 [Jatropha curcas]
12 Hb_001377_100 0.0875558689 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]
13 Hb_009486_090 0.0891006575 - - RNA binding protein, putative [Ricinus communis]
14 Hb_006816_280 0.0902722584 - - PREDICTED: uncharacterized protein LOC105647448 isoform X2 [Jatropha curcas]
15 Hb_008387_020 0.091286757 - - PREDICTED: FHA domain-containing protein DDL isoform X1 [Jatropha curcas]
16 Hb_188281_040 0.09203149 - - PREDICTED: transcription initiation factor TFIID subunit 12 [Jatropha curcas]
17 Hb_011485_060 0.0928384928 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 3 [Jatropha curcas]
18 Hb_004048_120 0.0935358142 - - PREDICTED: nuclear pore complex protein NUP160 isoform X3 [Jatropha curcas]
19 Hb_019337_020 0.0935979964 - - K+ uptake permease 11 isoform 1 [Theobroma cacao]
20 Hb_003280_020 0.0938361507 - - PREDICTED: enhancer of mRNA-decapping protein 4 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_007472_090 Hb_007472_090 Hb_004208_050 Hb_004208_050 Hb_007472_090--Hb_004208_050 Hb_000922_030 Hb_000922_030 Hb_007472_090--Hb_000922_030 Hb_002908_040 Hb_002908_040 Hb_007472_090--Hb_002908_040 Hb_002639_110 Hb_002639_110 Hb_007472_090--Hb_002639_110 Hb_000358_050 Hb_000358_050 Hb_007472_090--Hb_000358_050 Hb_007441_160 Hb_007441_160 Hb_007472_090--Hb_007441_160 Hb_000261_480 Hb_000261_480 Hb_004208_050--Hb_000261_480 Hb_004048_120 Hb_004048_120 Hb_004208_050--Hb_004048_120 Hb_004208_050--Hb_000358_050 Hb_011819_020 Hb_011819_020 Hb_004208_050--Hb_011819_020 Hb_002890_130 Hb_002890_130 Hb_004208_050--Hb_002890_130 Hb_002411_110 Hb_002411_110 Hb_004208_050--Hb_002411_110 Hb_000922_030--Hb_000358_050 Hb_002025_330 Hb_002025_330 Hb_000922_030--Hb_002025_330 Hb_135572_010 Hb_135572_010 Hb_000922_030--Hb_135572_010 Hb_004143_160 Hb_004143_160 Hb_000922_030--Hb_004143_160 Hb_000365_240 Hb_000365_240 Hb_000922_030--Hb_000365_240 Hb_001223_010 Hb_001223_010 Hb_002908_040--Hb_001223_010 Hb_002908_040--Hb_002639_110 Hb_004306_120 Hb_004306_120 Hb_002908_040--Hb_004306_120 Hb_002805_210 Hb_002805_210 Hb_002908_040--Hb_002805_210 Hb_001691_200 Hb_001691_200 Hb_002908_040--Hb_001691_200 Hb_011485_060 Hb_011485_060 Hb_002639_110--Hb_011485_060 Hb_002639_110--Hb_001223_010 Hb_002639_110--Hb_000365_240 Hb_002609_080 Hb_002609_080 Hb_002639_110--Hb_002609_080 Hb_000358_050--Hb_004048_120 Hb_000358_050--Hb_004143_160 Hb_000358_050--Hb_011485_060 Hb_000358_050--Hb_135572_010 Hb_005186_040 Hb_005186_040 Hb_007441_160--Hb_005186_040 Hb_000672_040 Hb_000672_040 Hb_007441_160--Hb_000672_040 Hb_001999_290 Hb_001999_290 Hb_007441_160--Hb_001999_290 Hb_000640_040 Hb_000640_040 Hb_007441_160--Hb_000640_040 Hb_001865_070 Hb_001865_070 Hb_007441_160--Hb_001865_070 Hb_012244_020 Hb_012244_020 Hb_007441_160--Hb_012244_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.97812 6.03048 4.25603 3.60933 4.38698 4.39377
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.01005 2.82235 5.07295 8.99508 9.88348

CAGE analysis