Hb_000922_030

Information

Type -
Description -
Location Contig922: 48826-57170
Sequence    

Annotation

kegg
ID rcu:RCOM_1510790
description EXECUTER1 protein, chloroplast precursor, putative
nr
ID XP_012080080.1
description PREDICTED: protein EXECUTER 2, chloroplastic [Jatropha curcas]
swissprot
ID Q94AT5
description Protein EXECUTER 2, chloroplastic OS=Arabidopsis thaliana GN=EX2 PE=2 SV=1
trembl
ID A0A067KGZ7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11485 PE=4 SV=1
Gene Ontology
ID GO:0042651
description protein executer chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62476: 48933-55835
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000922_030 0.0 - - PREDICTED: protein EXECUTER 2, chloroplastic [Jatropha curcas]
2 Hb_000358_050 0.0596504904 - - PREDICTED: uncharacterized protein LOC105633378 [Jatropha curcas]
3 Hb_002025_330 0.0649458976 - - peptide transporter, putative [Ricinus communis]
4 Hb_135572_010 0.071319839 - - GTP-binding protein alpha subunit, gna, putative [Ricinus communis]
5 Hb_004143_160 0.0746878778 - - SAB, putative [Ricinus communis]
6 Hb_000365_240 0.076249851 - - PREDICTED: mediator of RNA polymerase II transcription subunit 33A-like [Jatropha curcas]
7 Hb_007472_090 0.078972303 - - unnamed protein product [Coffea canephora]
8 Hb_001105_020 0.0796841301 - - expressed protein, putative [Ricinus communis]
9 Hb_000809_230 0.0798519028 - - PREDICTED: uncharacterized protein LOC105639681 isoform X1 [Jatropha curcas]
10 Hb_003280_020 0.0799957012 - - PREDICTED: enhancer of mRNA-decapping protein 4 isoform X1 [Jatropha curcas]
11 Hb_004048_120 0.0843831141 - - PREDICTED: nuclear pore complex protein NUP160 isoform X3 [Jatropha curcas]
12 Hb_004679_030 0.0844967303 - - PREDICTED: LOW QUALITY PROTEIN: F-box protein SKIP23-like [Jatropha curcas]
13 Hb_001377_350 0.0846186335 - - PREDICTED: exportin-2 [Jatropha curcas]
14 Hb_019337_020 0.0860830806 - - K+ uptake permease 11 isoform 1 [Theobroma cacao]
15 Hb_025193_040 0.0868372621 - - PREDICTED: uncharacterized protein LOC105647286 [Jatropha curcas]
16 Hb_002055_040 0.0868559439 - - PREDICTED: large subunit GTPase 1 homolog [Jatropha curcas]
17 Hb_000359_210 0.0869448165 - - conserved hypothetical protein [Ricinus communis]
18 Hb_008387_020 0.0872604005 - - PREDICTED: FHA domain-containing protein DDL isoform X1 [Jatropha curcas]
19 Hb_011228_010 0.0893656631 - - PREDICTED: vacuolar protein sorting-associated protein 54, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_000261_480 0.0895620521 - - 26S proteasome regulatory subunit family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_000922_030 Hb_000922_030 Hb_000358_050 Hb_000358_050 Hb_000922_030--Hb_000358_050 Hb_002025_330 Hb_002025_330 Hb_000922_030--Hb_002025_330 Hb_135572_010 Hb_135572_010 Hb_000922_030--Hb_135572_010 Hb_004143_160 Hb_004143_160 Hb_000922_030--Hb_004143_160 Hb_000365_240 Hb_000365_240 Hb_000922_030--Hb_000365_240 Hb_007472_090 Hb_007472_090 Hb_000922_030--Hb_007472_090 Hb_004048_120 Hb_004048_120 Hb_000358_050--Hb_004048_120 Hb_000358_050--Hb_004143_160 Hb_004208_050 Hb_004208_050 Hb_000358_050--Hb_004208_050 Hb_011485_060 Hb_011485_060 Hb_000358_050--Hb_011485_060 Hb_000358_050--Hb_135572_010 Hb_003280_020 Hb_003280_020 Hb_002025_330--Hb_003280_020 Hb_002025_330--Hb_004048_120 Hb_002025_330--Hb_004143_160 Hb_002025_330--Hb_000358_050 Hb_055062_040 Hb_055062_040 Hb_002025_330--Hb_055062_040 Hb_007994_010 Hb_007994_010 Hb_135572_010--Hb_007994_010 Hb_001377_100 Hb_001377_100 Hb_135572_010--Hb_001377_100 Hb_135572_010--Hb_004143_160 Hb_000363_300 Hb_000363_300 Hb_135572_010--Hb_000363_300 Hb_004143_160--Hb_004048_120 Hb_004143_160--Hb_007994_010 Hb_002639_080 Hb_002639_080 Hb_004143_160--Hb_002639_080 Hb_002055_040 Hb_002055_040 Hb_000365_240--Hb_002055_040 Hb_001163_060 Hb_001163_060 Hb_000365_240--Hb_001163_060 Hb_001157_240 Hb_001157_240 Hb_000365_240--Hb_001157_240 Hb_002539_070 Hb_002539_070 Hb_000365_240--Hb_002539_070 Hb_004218_190 Hb_004218_190 Hb_000365_240--Hb_004218_190 Hb_007472_090--Hb_004208_050 Hb_002908_040 Hb_002908_040 Hb_007472_090--Hb_002908_040 Hb_002639_110 Hb_002639_110 Hb_007472_090--Hb_002639_110 Hb_007472_090--Hb_000358_050 Hb_007441_160 Hb_007441_160 Hb_007472_090--Hb_007441_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.91109 8.26606 8.30164 11.1494 8.08854 11.4132
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.24723 5.45552 11.3073 18.0033 21.8679

CAGE analysis