Hb_011485_060

Information

Type transcription factor
Description TF Family: CAMTA
Location Contig11485: 64035-78224
Sequence    

Annotation

kegg
ID vvi:100247418
description calmodulin-binding transcription activator 3
nr
ID XP_012088869.1
description PREDICTED: calmodulin-binding transcription activator 3 [Jatropha curcas]
swissprot
ID Q8GSA7
description Calmodulin-binding transcription activator 3 OS=Arabidopsis thaliana GN=CMTA3 PE=1 SV=1
trembl
ID A0A067LHJ4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24032 PE=4 SV=1
Gene Ontology
ID GO:0005634
description calmodulin-binding transcription activator 3-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04480: 64393-69848 , PASA_asmbl_04481: 73989-74241 , PASA_asmbl_04482: 74369-74890 , PASA_asmbl_04483: 74967-78205
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011485_060 0.0 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 3 [Jatropha curcas]
2 Hb_000358_050 0.0637358047 - - PREDICTED: uncharacterized protein LOC105633378 [Jatropha curcas]
3 Hb_000890_070 0.0728657278 - - PREDICTED: protein ALWAYS EARLY 3 isoform X2 [Jatropha curcas]
4 Hb_002213_020 0.0751890141 - - PREDICTED: uncharacterized protein LOC105630320 isoform X1 [Jatropha curcas]
5 Hb_004048_120 0.0769561294 - - PREDICTED: nuclear pore complex protein NUP160 isoform X3 [Jatropha curcas]
6 Hb_004208_050 0.0797762663 desease resistance Gene Name: CDC48_N cell division cycle protein 48 [Hevea brasiliensis]
7 Hb_000059_240 0.079989915 - - PREDICTED: protein FRIGIDA [Jatropha curcas]
8 Hb_002609_080 0.0841599574 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 7, chloroplastic-like [Jatropha curcas]
9 Hb_003280_020 0.0845450615 - - PREDICTED: enhancer of mRNA-decapping protein 4 isoform X1 [Jatropha curcas]
10 Hb_001691_200 0.0852590772 - - DNA-directed RNA polymerase II subunit RPB2 [Auxenochlorella protothecoides]
11 Hb_011537_060 0.0865195412 - - UPF0061 protein azo1574 [Morus notabilis]
12 Hb_004677_050 0.0879078454 - - PREDICTED: importin beta-like SAD2 isoform X2 [Jatropha curcas]
13 Hb_000363_300 0.0887448764 - - PREDICTED: protein ENHANCED DOWNY MILDEW 2 isoform X1 [Jatropha curcas]
14 Hb_005489_040 0.0890373925 - - PREDICTED: cullin-1 [Jatropha curcas]
15 Hb_002025_330 0.0893292673 - - peptide transporter, putative [Ricinus communis]
16 Hb_002749_060 0.0895272606 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Jatropha curcas]
17 Hb_007472_090 0.0928384928 - - unnamed protein product [Coffea canephora]
18 Hb_004143_160 0.0929205663 - - SAB, putative [Ricinus communis]
19 Hb_002639_110 0.0935096501 - - hypothetical protein L484_011673 [Morus notabilis]
20 Hb_006031_010 0.0944924323 - - PREDICTED: transcription initiation factor TFIID subunit 15b isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_011485_060 Hb_011485_060 Hb_000358_050 Hb_000358_050 Hb_011485_060--Hb_000358_050 Hb_000890_070 Hb_000890_070 Hb_011485_060--Hb_000890_070 Hb_002213_020 Hb_002213_020 Hb_011485_060--Hb_002213_020 Hb_004048_120 Hb_004048_120 Hb_011485_060--Hb_004048_120 Hb_004208_050 Hb_004208_050 Hb_011485_060--Hb_004208_050 Hb_000059_240 Hb_000059_240 Hb_011485_060--Hb_000059_240 Hb_000358_050--Hb_004048_120 Hb_004143_160 Hb_004143_160 Hb_000358_050--Hb_004143_160 Hb_000358_050--Hb_004208_050 Hb_000922_030 Hb_000922_030 Hb_000358_050--Hb_000922_030 Hb_135572_010 Hb_135572_010 Hb_000358_050--Hb_135572_010 Hb_002749_060 Hb_002749_060 Hb_000890_070--Hb_002749_060 Hb_004450_070 Hb_004450_070 Hb_000890_070--Hb_004450_070 Hb_000890_070--Hb_004048_120 Hb_003280_020 Hb_003280_020 Hb_000890_070--Hb_003280_020 Hb_003340_010 Hb_003340_010 Hb_000890_070--Hb_003340_010 Hb_002874_110 Hb_002874_110 Hb_000890_070--Hb_002874_110 Hb_004677_050 Hb_004677_050 Hb_002213_020--Hb_004677_050 Hb_000984_170 Hb_000984_170 Hb_002213_020--Hb_000984_170 Hb_002213_020--Hb_004208_050 Hb_002213_020--Hb_000358_050 Hb_001925_060 Hb_001925_060 Hb_002213_020--Hb_001925_060 Hb_004048_120--Hb_003280_020 Hb_004048_120--Hb_004143_160 Hb_002025_330 Hb_002025_330 Hb_004048_120--Hb_002025_330 Hb_004048_120--Hb_002749_060 Hb_000261_480 Hb_000261_480 Hb_004048_120--Hb_000261_480 Hb_004208_050--Hb_000261_480 Hb_004208_050--Hb_004048_120 Hb_011819_020 Hb_011819_020 Hb_004208_050--Hb_011819_020 Hb_002890_130 Hb_002890_130 Hb_004208_050--Hb_002890_130 Hb_002411_110 Hb_002411_110 Hb_004208_050--Hb_002411_110 Hb_000960_080 Hb_000960_080 Hb_000059_240--Hb_000960_080 Hb_003680_020 Hb_003680_020 Hb_000059_240--Hb_003680_020 Hb_000318_150 Hb_000318_150 Hb_000059_240--Hb_000318_150 Hb_006210_010 Hb_006210_010 Hb_000059_240--Hb_006210_010 Hb_033312_130 Hb_033312_130 Hb_000059_240--Hb_033312_130 Hb_007904_300 Hb_007904_300 Hb_000059_240--Hb_007904_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.21652 7.09396 5.07755 6.34994 3.4577 5.02761
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.89414 3.05141 4.28355 11.4011 12.1267

CAGE analysis