Hb_004450_070

Information

Type -
Description -
Location Contig4450: 70710-76345
Sequence    

Annotation

kegg
ID rcu:RCOM_0466960
description 2-hydroxyphytanoyl-CoA lyase, putative (EC:4.1.1.8)
nr
ID XP_012078036.1
description PREDICTED: 2-hydroxyacyl-CoA lyase [Jatropha curcas]
swissprot
ID Q9LF46
description 2-hydroxyacyl-CoA lyase OS=Arabidopsis thaliana GN=HACL PE=1 SV=1
trembl
ID A0A067KA75
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13058 PE=3 SV=1
Gene Ontology
ID GO:0005829
description 2-hydroxyacyl- lyase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42950: 70746-76341
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004450_070 0.0 - - PREDICTED: 2-hydroxyacyl-CoA lyase [Jatropha curcas]
2 Hb_000890_070 0.0583407298 - - PREDICTED: protein ALWAYS EARLY 3 isoform X2 [Jatropha curcas]
3 Hb_019280_010 0.0590717533 - - PREDICTED: F-box protein At5g39450 isoform X2 [Jatropha curcas]
4 Hb_000152_700 0.0599103029 - - PREDICTED: E3 ubiquitin protein ligase RIN2 [Jatropha curcas]
5 Hb_001642_070 0.0664910664 - - PREDICTED: uncharacterized protein LOC105646431 [Jatropha curcas]
6 Hb_004677_050 0.0676954795 - - PREDICTED: importin beta-like SAD2 isoform X2 [Jatropha curcas]
7 Hb_000237_050 0.0712447423 - - CP2 [Hevea brasiliensis]
8 Hb_000649_060 0.0742551963 - - PREDICTED: E3 ubiquitin protein ligase RIE1 [Jatropha curcas]
9 Hb_007747_170 0.0798636218 - - PREDICTED: uncharacterized protein At5g41620 [Jatropha curcas]
10 Hb_002749_060 0.0813760009 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Jatropha curcas]
11 Hb_001587_030 0.0817355813 - - hypothetical protein JCGZ_09892 [Jatropha curcas]
12 Hb_012286_040 0.0823338504 - - PREDICTED: pre-mRNA-splicing factor RSE1 [Jatropha curcas]
13 Hb_020805_180 0.0826879923 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
14 Hb_000085_450 0.0828259152 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 20 [Jatropha curcas]
15 Hb_001500_100 0.0849073669 - - conserved hypothetical protein [Ricinus communis]
16 Hb_075315_010 0.0864062406 - - ornithine aminotransferase [Camellia sinensis]
17 Hb_004837_280 0.0870057991 - - PREDICTED: uncharacterized protein LOC105648296 [Jatropha curcas]
18 Hb_002851_010 0.0871147464 - - sugar transporter, putative [Ricinus communis]
19 Hb_005074_020 0.0874461145 - - PREDICTED: uncharacterized protein LOC105644455 isoform X1 [Jatropha curcas]
20 Hb_004048_120 0.0881492858 - - PREDICTED: nuclear pore complex protein NUP160 isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_004450_070 Hb_004450_070 Hb_000890_070 Hb_000890_070 Hb_004450_070--Hb_000890_070 Hb_019280_010 Hb_019280_010 Hb_004450_070--Hb_019280_010 Hb_000152_700 Hb_000152_700 Hb_004450_070--Hb_000152_700 Hb_001642_070 Hb_001642_070 Hb_004450_070--Hb_001642_070 Hb_004677_050 Hb_004677_050 Hb_004450_070--Hb_004677_050 Hb_000237_050 Hb_000237_050 Hb_004450_070--Hb_000237_050 Hb_002749_060 Hb_002749_060 Hb_000890_070--Hb_002749_060 Hb_004048_120 Hb_004048_120 Hb_000890_070--Hb_004048_120 Hb_003280_020 Hb_003280_020 Hb_000890_070--Hb_003280_020 Hb_003340_010 Hb_003340_010 Hb_000890_070--Hb_003340_010 Hb_002874_110 Hb_002874_110 Hb_000890_070--Hb_002874_110 Hb_103684_010 Hb_103684_010 Hb_019280_010--Hb_103684_010 Hb_001500_100 Hb_001500_100 Hb_019280_010--Hb_001500_100 Hb_019280_010--Hb_000237_050 Hb_019280_010--Hb_004677_050 Hb_000085_450 Hb_000085_450 Hb_019280_010--Hb_000085_450 Hb_000649_060 Hb_000649_060 Hb_000152_700--Hb_000649_060 Hb_000342_050 Hb_000342_050 Hb_000152_700--Hb_000342_050 Hb_001097_040 Hb_001097_040 Hb_000152_700--Hb_001097_040 Hb_001226_130 Hb_001226_130 Hb_000152_700--Hb_001226_130 Hb_020805_180 Hb_020805_180 Hb_000152_700--Hb_020805_180 Hb_016347_010 Hb_016347_010 Hb_001642_070--Hb_016347_010 Hb_000327_250 Hb_000327_250 Hb_001642_070--Hb_000327_250 Hb_001642_070--Hb_019280_010 Hb_000363_040 Hb_000363_040 Hb_001642_070--Hb_000363_040 Hb_000209_100 Hb_000209_100 Hb_001642_070--Hb_000209_100 Hb_002213_020 Hb_002213_020 Hb_004677_050--Hb_002213_020 Hb_000984_170 Hb_000984_170 Hb_004677_050--Hb_000984_170 Hb_005663_110 Hb_005663_110 Hb_004677_050--Hb_005663_110 Hb_004677_050--Hb_016347_010 Hb_004208_050 Hb_004208_050 Hb_004677_050--Hb_004208_050 Hb_004677_050--Hb_002749_060 Hb_000237_050--Hb_103684_010 Hb_003097_140 Hb_003097_140 Hb_000237_050--Hb_003097_140 Hb_027445_020 Hb_027445_020 Hb_000237_050--Hb_027445_020 Hb_001437_190 Hb_001437_190 Hb_000237_050--Hb_001437_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.3007 24.0572 13.7512 33.3947 12.0431 14.6765
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.9691 9.58962 12.4589 37.6012 26.0998

CAGE analysis