Hb_001642_070

Information

Type -
Description -
Location Contig1642: 151340-157501
Sequence    

Annotation

kegg
ID rcu:RCOM_0807090
description hypothetical protein
nr
ID XP_012087676.1
description PREDICTED: uncharacterized protein LOC105646431 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JL94
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25332 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15097: 150324-157186 , PASA_asmbl_15098: 152562-152823 , PASA_asmbl_15099: 156012-157186
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001642_070 0.0 - - PREDICTED: uncharacterized protein LOC105646431 [Jatropha curcas]
2 Hb_004450_070 0.0664910664 - - PREDICTED: 2-hydroxyacyl-CoA lyase [Jatropha curcas]
3 Hb_016347_010 0.0777473996 - - protein transporter, putative [Ricinus communis]
4 Hb_000327_250 0.0845985353 - - PREDICTED: macrophage erythroblast attacher [Jatropha curcas]
5 Hb_019280_010 0.0848614693 - - PREDICTED: F-box protein At5g39450 isoform X2 [Jatropha curcas]
6 Hb_000363_040 0.0867061271 - - Protein transport protein Sec24A, putative [Ricinus communis]
7 Hb_000209_100 0.0868954539 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 2 isoform X2 [Jatropha curcas]
8 Hb_001500_100 0.0884262733 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000152_700 0.0898071868 - - PREDICTED: E3 ubiquitin protein ligase RIN2 [Jatropha curcas]
10 Hb_004677_050 0.0905872549 - - PREDICTED: importin beta-like SAD2 isoform X2 [Jatropha curcas]
11 Hb_007904_130 0.0909320872 - - PREDICTED: ultraviolet-B receptor UVR8 [Jatropha curcas]
12 Hb_001170_030 0.0919574188 - - synaptonemal complex protein, putative [Ricinus communis]
13 Hb_005074_020 0.0924479738 - - PREDICTED: uncharacterized protein LOC105644455 isoform X1 [Jatropha curcas]
14 Hb_003544_030 0.0928969397 - - PREDICTED: citrate synthase, glyoxysomal [Jatropha curcas]
15 Hb_000649_060 0.0964893883 - - PREDICTED: E3 ubiquitin protein ligase RIE1 [Jatropha curcas]
16 Hb_000890_070 0.0995461438 - - PREDICTED: protein ALWAYS EARLY 3 isoform X2 [Jatropha curcas]
17 Hb_004208_050 0.1003241234 desease resistance Gene Name: CDC48_N cell division cycle protein 48 [Hevea brasiliensis]
18 Hb_103684_010 0.1009011284 - - PREDICTED: cullin-1 isoform X3 [Nicotiana tomentosiformis]
19 Hb_011287_010 0.1015876147 - - ubiquitin-protein ligase, putative [Ricinus communis]
20 Hb_011883_020 0.1021534453 - - PREDICTED: LOW QUALITY PROTEIN: aspartate--tRNA ligase, cytoplasmic-like [Jatropha curcas]

Gene co-expression network

sample Hb_001642_070 Hb_001642_070 Hb_004450_070 Hb_004450_070 Hb_001642_070--Hb_004450_070 Hb_016347_010 Hb_016347_010 Hb_001642_070--Hb_016347_010 Hb_000327_250 Hb_000327_250 Hb_001642_070--Hb_000327_250 Hb_019280_010 Hb_019280_010 Hb_001642_070--Hb_019280_010 Hb_000363_040 Hb_000363_040 Hb_001642_070--Hb_000363_040 Hb_000209_100 Hb_000209_100 Hb_001642_070--Hb_000209_100 Hb_000890_070 Hb_000890_070 Hb_004450_070--Hb_000890_070 Hb_004450_070--Hb_019280_010 Hb_000152_700 Hb_000152_700 Hb_004450_070--Hb_000152_700 Hb_004677_050 Hb_004677_050 Hb_004450_070--Hb_004677_050 Hb_000237_050 Hb_000237_050 Hb_004450_070--Hb_000237_050 Hb_016347_010--Hb_000363_040 Hb_016347_010--Hb_000327_250 Hb_016347_010--Hb_004677_050 Hb_002908_050 Hb_002908_050 Hb_016347_010--Hb_002908_050 Hb_003544_030 Hb_003544_030 Hb_016347_010--Hb_003544_030 Hb_021576_010 Hb_021576_010 Hb_016347_010--Hb_021576_010 Hb_000327_250--Hb_003544_030 Hb_005663_110 Hb_005663_110 Hb_000327_250--Hb_005663_110 Hb_004096_110 Hb_004096_110 Hb_000327_250--Hb_004096_110 Hb_000327_250--Hb_021576_010 Hb_001434_080 Hb_001434_080 Hb_000327_250--Hb_001434_080 Hb_103684_010 Hb_103684_010 Hb_019280_010--Hb_103684_010 Hb_001500_100 Hb_001500_100 Hb_019280_010--Hb_001500_100 Hb_019280_010--Hb_000237_050 Hb_019280_010--Hb_004677_050 Hb_000085_450 Hb_000085_450 Hb_019280_010--Hb_000085_450 Hb_000363_040--Hb_002908_050 Hb_005305_050 Hb_005305_050 Hb_000363_040--Hb_005305_050 Hb_000363_040--Hb_004677_050 Hb_000109_180 Hb_000109_180 Hb_000363_040--Hb_000109_180 Hb_000976_100 Hb_000976_100 Hb_000363_040--Hb_000976_100 Hb_006916_110 Hb_006916_110 Hb_000209_100--Hb_006916_110 Hb_000535_050 Hb_000535_050 Hb_000209_100--Hb_000535_050 Hb_011925_020 Hb_011925_020 Hb_000209_100--Hb_011925_020 Hb_005074_020 Hb_005074_020 Hb_000209_100--Hb_005074_020 Hb_000209_100--Hb_016347_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.78464 6.43611 3.44965 8.50971 3.03009 3.19499
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.74224 3.03597 5.10523 11.5124 6.35015

CAGE analysis