Hb_000535_050

Information

Type -
Description -
Location Contig535: 48140-55340
Sequence    

Annotation

kegg
ID rcu:RCOM_0864140
description electron transporter, putative (EC:1.12.7.2)
nr
ID XP_012064648.1
description PREDICTED: cytosolic Fe-S cluster assembly factor narfl [Jatropha curcas]
swissprot
ID Q5BK18
description Cytosolic Fe-S cluster assembly factor NARFL OS=Rattus norvegicus GN=Narfl PE=2 SV=1
trembl
ID A0A067L9L4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05395 PE=4 SV=1
Gene Ontology
ID GO:0005634
description cytosolic fe-s cluster assembly factor narfl

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47527: 48196-55227
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000535_050 0.0 - - PREDICTED: cytosolic Fe-S cluster assembly factor narfl [Jatropha curcas]
2 Hb_000666_010 0.06966827 - - conserved hypothetical protein [Ricinus communis]
3 Hb_007904_300 0.07272708 - - copine, putative [Ricinus communis]
4 Hb_004218_180 0.0846325916 - - PREDICTED: flowering time control protein FY isoform X2 [Jatropha curcas]
5 Hb_000227_160 0.085109698 - - PREDICTED: E3 ubiquitin-protein ligase RHF1A [Jatropha curcas]
6 Hb_001586_030 0.0878550181 - - aspartyl-tRNA synthetase, putative [Ricinus communis]
7 Hb_000109_180 0.0881949824 - - PREDICTED: AP-1 complex subunit gamma-2-like [Jatropha curcas]
8 Hb_001975_150 0.0894273425 - - PREDICTED: RINT1-like protein MAG2L [Jatropha curcas]
9 Hb_001691_200 0.0898290959 - - DNA-directed RNA polymerase II subunit RPB2 [Auxenochlorella protothecoides]
10 Hb_000209_100 0.0933623261 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 2 isoform X2 [Jatropha curcas]
11 Hb_000035_390 0.0934631023 - - hypothetical protein CISIN_1g003355mg [Citrus sinensis]
12 Hb_016347_010 0.0935180654 - - protein transporter, putative [Ricinus communis]
13 Hb_028487_160 0.0942040282 - - clathrin assembly protein, putative [Ricinus communis]
14 Hb_011883_020 0.0943309142 - - PREDICTED: LOW QUALITY PROTEIN: aspartate--tRNA ligase, cytoplasmic-like [Jatropha curcas]
15 Hb_001571_060 0.095481974 - - PREDICTED: uncharacterized protein LOC105643976 [Jatropha curcas]
16 Hb_000059_240 0.0956324798 - - PREDICTED: protein FRIGIDA [Jatropha curcas]
17 Hb_001269_380 0.0958506007 - - PREDICTED: uncharacterized protein LOC105630320 isoform X1 [Jatropha curcas]
18 Hb_006059_010 0.0974127898 - - PREDICTED: uncharacterized protein LOC105648671 [Jatropha curcas]
19 Hb_003777_290 0.0975767455 - - polypyrimidine tract binding protein, putative [Ricinus communis]
20 Hb_001811_170 0.0977978839 - - dynamin, putative [Ricinus communis]

Gene co-expression network

sample Hb_000535_050 Hb_000535_050 Hb_000666_010 Hb_000666_010 Hb_000535_050--Hb_000666_010 Hb_007904_300 Hb_007904_300 Hb_000535_050--Hb_007904_300 Hb_004218_180 Hb_004218_180 Hb_000535_050--Hb_004218_180 Hb_000227_160 Hb_000227_160 Hb_000535_050--Hb_000227_160 Hb_001586_030 Hb_001586_030 Hb_000535_050--Hb_001586_030 Hb_000109_180 Hb_000109_180 Hb_000535_050--Hb_000109_180 Hb_001956_060 Hb_001956_060 Hb_000666_010--Hb_001956_060 Hb_000666_010--Hb_007904_300 Hb_000510_170 Hb_000510_170 Hb_000666_010--Hb_000510_170 Hb_001811_170 Hb_001811_170 Hb_000666_010--Hb_001811_170 Hb_000012_240 Hb_000012_240 Hb_000666_010--Hb_000012_240 Hb_006824_010 Hb_006824_010 Hb_007904_300--Hb_006824_010 Hb_008948_020 Hb_008948_020 Hb_007904_300--Hb_008948_020 Hb_000059_240 Hb_000059_240 Hb_007904_300--Hb_000059_240 Hb_000139_080 Hb_000139_080 Hb_007904_300--Hb_000139_080 Hb_000684_500 Hb_000684_500 Hb_007904_300--Hb_000684_500 Hb_006100_020 Hb_006100_020 Hb_004218_180--Hb_006100_020 Hb_000270_170 Hb_000270_170 Hb_004218_180--Hb_000270_170 Hb_011537_060 Hb_011537_060 Hb_004218_180--Hb_011537_060 Hb_001975_150 Hb_001975_150 Hb_004218_180--Hb_001975_150 Hb_004218_180--Hb_008948_020 Hb_001141_240 Hb_001141_240 Hb_004218_180--Hb_001141_240 Hb_008748_030 Hb_008748_030 Hb_000227_160--Hb_008748_030 Hb_028487_160 Hb_028487_160 Hb_000227_160--Hb_028487_160 Hb_012262_030 Hb_012262_030 Hb_000227_160--Hb_012262_030 Hb_000367_090 Hb_000367_090 Hb_000227_160--Hb_000367_090 Hb_008289_040 Hb_008289_040 Hb_000227_160--Hb_008289_040 Hb_000029_190 Hb_000029_190 Hb_000227_160--Hb_000029_190 Hb_011883_020 Hb_011883_020 Hb_001586_030--Hb_011883_020 Hb_004096_110 Hb_004096_110 Hb_001586_030--Hb_004096_110 Hb_021510_010 Hb_021510_010 Hb_001586_030--Hb_021510_010 Hb_005074_020 Hb_005074_020 Hb_001586_030--Hb_005074_020 Hb_001691_200 Hb_001691_200 Hb_001586_030--Hb_001691_200 Hb_000109_180--Hb_008748_030 Hb_006059_010 Hb_006059_010 Hb_000109_180--Hb_006059_010 Hb_000012_310 Hb_000012_310 Hb_000109_180--Hb_000012_310 Hb_000109_180--Hb_000227_160 Hb_000363_040 Hb_000363_040 Hb_000109_180--Hb_000363_040 Hb_005305_050 Hb_005305_050 Hb_000109_180--Hb_005305_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.97138 6.8003 6.2794 8.62926 1.87396 3.39133
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.11145 4.25229 5.4471 10.5961 8.9306

CAGE analysis