Hb_000684_500

Information

Type -
Description -
Location Contig684: 459564-464709
Sequence    

Annotation

kegg
ID rcu:RCOM_0819910
description receptor serine-threonine protein kinase, putative (EC:2.7.10.2)
nr
ID XP_002525201.1
description receptor serine-threonine protein kinase, putative [Ricinus communis]
swissprot
ID Q0WRY5
description Serine/threonine-protein kinase CDL1 OS=Arabidopsis thaliana GN=CDL1 PE=1 SV=1
trembl
ID B9SGT2
description Receptor serine-threonine protein kinase, putative OS=Ricinus communis GN=RCOM_0819910 PE=3 SV=1
Gene Ontology
ID GO:0005886
description serine threonine-protein kinase pbs1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54042: 459633-464595
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000684_500 0.0 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
2 Hb_007904_300 0.0742552249 - - copine, putative [Ricinus communis]
3 Hb_000367_090 0.0840494094 - - PREDICTED: plant intracellular Ras-group-related LRR protein 7 [Jatropha curcas]
4 Hb_008948_020 0.0847024441 - - hypothetical protein JCGZ_21216 [Jatropha curcas]
5 Hb_004705_170 0.0857438395 - - PREDICTED: ubiquitin thioesterase otubain-like [Jatropha curcas]
6 Hb_000699_150 0.0905350933 - - PREDICTED: AT-hook motif nuclear-localized protein 14 [Jatropha curcas]
7 Hb_015099_030 0.0906772018 - - PREDICTED: uncharacterized protein LOC105649867 [Jatropha curcas]
8 Hb_000787_160 0.0915062616 - - PREDICTED: GDP-mannose transporter GONST1 isoform X1 [Jatropha curcas]
9 Hb_004333_040 0.0927133964 - - PREDICTED: uncharacterized protein LOC105629988 [Jatropha curcas]
10 Hb_003883_060 0.0930081932 transcription factor TF Family: BSD PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1 isoform X1 [Jatropha curcas]
11 Hb_004037_020 0.0956108498 - - PREDICTED: uncharacterized protein LOC105632366 isoform X1 [Jatropha curcas]
12 Hb_007413_010 0.0962445543 - - PREDICTED: SUMO-activating enzyme subunit 2 [Jatropha curcas]
13 Hb_011224_050 0.0968981419 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Populus euphratica]
14 Hb_189216_010 0.097218575 - - PREDICTED: uncharacterized protein LOC105642236 isoform X1 [Jatropha curcas]
15 Hb_006824_010 0.0991359489 - - PREDICTED: origin of replication complex subunit 4 [Jatropha curcas]
16 Hb_003020_100 0.0994805428 - - PREDICTED: transcription initiation factor IIA large subunit [Jatropha curcas]
17 Hb_001625_020 0.0995735421 - - PREDICTED: uncharacterized protein LOC105645914 [Jatropha curcas]
18 Hb_007472_070 0.1002711204 - - cir, putative [Ricinus communis]
19 Hb_012239_070 0.1003172474 - - PREDICTED: uncharacterized protein LOC105634113 [Jatropha curcas]
20 Hb_000139_080 0.10041343 - - PREDICTED: vacuole membrane protein KMS1 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000684_500 Hb_000684_500 Hb_007904_300 Hb_007904_300 Hb_000684_500--Hb_007904_300 Hb_000367_090 Hb_000367_090 Hb_000684_500--Hb_000367_090 Hb_008948_020 Hb_008948_020 Hb_000684_500--Hb_008948_020 Hb_004705_170 Hb_004705_170 Hb_000684_500--Hb_004705_170 Hb_000699_150 Hb_000699_150 Hb_000684_500--Hb_000699_150 Hb_015099_030 Hb_015099_030 Hb_000684_500--Hb_015099_030 Hb_006824_010 Hb_006824_010 Hb_007904_300--Hb_006824_010 Hb_007904_300--Hb_008948_020 Hb_000059_240 Hb_000059_240 Hb_007904_300--Hb_000059_240 Hb_000535_050 Hb_000535_050 Hb_007904_300--Hb_000535_050 Hb_000139_080 Hb_000139_080 Hb_007904_300--Hb_000139_080 Hb_000046_170 Hb_000046_170 Hb_000367_090--Hb_000046_170 Hb_028487_160 Hb_028487_160 Hb_000367_090--Hb_028487_160 Hb_000227_160 Hb_000227_160 Hb_000367_090--Hb_000227_160 Hb_002357_060 Hb_002357_060 Hb_000367_090--Hb_002357_060 Hb_000367_090--Hb_004705_170 Hb_189216_010 Hb_189216_010 Hb_000367_090--Hb_189216_010 Hb_002411_110 Hb_002411_110 Hb_008948_020--Hb_002411_110 Hb_007413_010 Hb_007413_010 Hb_008948_020--Hb_007413_010 Hb_001716_040 Hb_001716_040 Hb_008948_020--Hb_001716_040 Hb_006913_020 Hb_006913_020 Hb_008948_020--Hb_006913_020 Hb_004435_030 Hb_004435_030 Hb_008948_020--Hb_004435_030 Hb_005582_040 Hb_005582_040 Hb_008948_020--Hb_005582_040 Hb_000215_300 Hb_000215_300 Hb_004705_170--Hb_000215_300 Hb_007472_070 Hb_007472_070 Hb_004705_170--Hb_007472_070 Hb_000345_160 Hb_000345_160 Hb_004705_170--Hb_000345_160 Hb_004037_020 Hb_004037_020 Hb_004705_170--Hb_004037_020 Hb_000778_010 Hb_000778_010 Hb_004705_170--Hb_000778_010 Hb_163175_010 Hb_163175_010 Hb_004705_170--Hb_163175_010 Hb_183433_010 Hb_183433_010 Hb_000699_150--Hb_183433_010 Hb_004333_040 Hb_004333_040 Hb_000699_150--Hb_004333_040 Hb_000699_150--Hb_007472_070 Hb_003098_070 Hb_003098_070 Hb_000699_150--Hb_003098_070 Hb_000365_230 Hb_000365_230 Hb_000699_150--Hb_000365_230 Hb_000176_020 Hb_000176_020 Hb_000699_150--Hb_000176_020 Hb_004957_030 Hb_004957_030 Hb_015099_030--Hb_004957_030 Hb_007545_010 Hb_007545_010 Hb_015099_030--Hb_007545_010 Hb_002006_150 Hb_002006_150 Hb_015099_030--Hb_002006_150 Hb_002774_190 Hb_002774_190 Hb_015099_030--Hb_002774_190 Hb_012733_040 Hb_012733_040 Hb_015099_030--Hb_012733_040 Hb_002883_030 Hb_002883_030 Hb_015099_030--Hb_002883_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.6296 21.6978 21.43 28.6579 5.55003 20.1186
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.5428 15.293 11.2263 25.7835 23.6817

CAGE analysis