Hb_007904_300

Information

Type -
Description -
Location Contig7904: 194397-199314
Sequence    

Annotation

kegg
ID rcu:RCOM_1083740
description copine, putative
nr
ID XP_002515058.1
description copine, putative [Ricinus communis]
swissprot
ID Q9LY87
description E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis thaliana GN=RGLG2 PE=1 SV=1
trembl
ID B9RMT9
description Copine, putative OS=Ricinus communis GN=RCOM_1083740 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin-protein ligase rglg2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58348: 194316-199339 , PASA_asmbl_58349: 198607-199272
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007904_300 0.0 - - copine, putative [Ricinus communis]
2 Hb_006824_010 0.0626030879 - - PREDICTED: origin of replication complex subunit 4 [Jatropha curcas]
3 Hb_008948_020 0.0646716566 - - hypothetical protein JCGZ_21216 [Jatropha curcas]
4 Hb_000059_240 0.0692613158 - - PREDICTED: protein FRIGIDA [Jatropha curcas]
5 Hb_000535_050 0.07272708 - - PREDICTED: cytosolic Fe-S cluster assembly factor narfl [Jatropha curcas]
6 Hb_000139_080 0.0739130005 - - PREDICTED: vacuole membrane protein KMS1 isoform X2 [Jatropha curcas]
7 Hb_000684_500 0.0742552249 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
8 Hb_006100_020 0.0751920545 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
9 Hb_000960_080 0.0752595962 - - PREDICTED: topless-related protein 1-like isoform X2 [Jatropha curcas]
10 Hb_002042_050 0.0773238354 - - PREDICTED: uncharacterized protein LOC105647554 isoform X1 [Jatropha curcas]
11 Hb_189216_010 0.0775172802 - - PREDICTED: uncharacterized protein LOC105642236 isoform X1 [Jatropha curcas]
12 Hb_001141_240 0.0782885013 - - PREDICTED: folate-biopterin transporter 1, chloroplastic [Jatropha curcas]
13 Hb_008289_040 0.0785598854 - - PREDICTED: suppressor of mec-8 and unc-52 protein homolog 1 [Jatropha curcas]
14 Hb_000227_160 0.0786349641 - - PREDICTED: E3 ubiquitin-protein ligase RHF1A [Jatropha curcas]
15 Hb_000666_010 0.079085961 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002272_030 0.0796914012 - - PREDICTED: cation/calcium exchanger 5 [Jatropha curcas]
17 Hb_033312_040 0.0823568379 - - PREDICTED: gamma-tubulin complex component 5-like isoform X1 [Jatropha curcas]
18 Hb_002006_150 0.0837712626 - - copine, putative [Ricinus communis]
19 Hb_004218_180 0.08404735 - - PREDICTED: flowering time control protein FY isoform X2 [Jatropha curcas]
20 Hb_001269_380 0.0850984897 - - PREDICTED: uncharacterized protein LOC105630320 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_007904_300 Hb_007904_300 Hb_006824_010 Hb_006824_010 Hb_007904_300--Hb_006824_010 Hb_008948_020 Hb_008948_020 Hb_007904_300--Hb_008948_020 Hb_000059_240 Hb_000059_240 Hb_007904_300--Hb_000059_240 Hb_000535_050 Hb_000535_050 Hb_007904_300--Hb_000535_050 Hb_000139_080 Hb_000139_080 Hb_007904_300--Hb_000139_080 Hb_000684_500 Hb_000684_500 Hb_007904_300--Hb_000684_500 Hb_002006_150 Hb_002006_150 Hb_006824_010--Hb_002006_150 Hb_006824_010--Hb_000139_080 Hb_006189_020 Hb_006189_020 Hb_006824_010--Hb_006189_020 Hb_003098_070 Hb_003098_070 Hb_006824_010--Hb_003098_070 Hb_001269_130 Hb_001269_130 Hb_006824_010--Hb_001269_130 Hb_002411_110 Hb_002411_110 Hb_008948_020--Hb_002411_110 Hb_007413_010 Hb_007413_010 Hb_008948_020--Hb_007413_010 Hb_001716_040 Hb_001716_040 Hb_008948_020--Hb_001716_040 Hb_006913_020 Hb_006913_020 Hb_008948_020--Hb_006913_020 Hb_004435_030 Hb_004435_030 Hb_008948_020--Hb_004435_030 Hb_005582_040 Hb_005582_040 Hb_008948_020--Hb_005582_040 Hb_000960_080 Hb_000960_080 Hb_000059_240--Hb_000960_080 Hb_003680_020 Hb_003680_020 Hb_000059_240--Hb_003680_020 Hb_000318_150 Hb_000318_150 Hb_000059_240--Hb_000318_150 Hb_006210_010 Hb_006210_010 Hb_000059_240--Hb_006210_010 Hb_033312_130 Hb_033312_130 Hb_000059_240--Hb_033312_130 Hb_000666_010 Hb_000666_010 Hb_000535_050--Hb_000666_010 Hb_004218_180 Hb_004218_180 Hb_000535_050--Hb_004218_180 Hb_000227_160 Hb_000227_160 Hb_000535_050--Hb_000227_160 Hb_001586_030 Hb_001586_030 Hb_000535_050--Hb_001586_030 Hb_000109_180 Hb_000109_180 Hb_000535_050--Hb_000109_180 Hb_000139_080--Hb_003098_070 Hb_033312_040 Hb_033312_040 Hb_000139_080--Hb_033312_040 Hb_000078_140 Hb_000078_140 Hb_000139_080--Hb_000078_140 Hb_000139_080--Hb_006189_020 Hb_003626_070 Hb_003626_070 Hb_000139_080--Hb_003626_070 Hb_000169_020 Hb_000169_020 Hb_000139_080--Hb_000169_020 Hb_000367_090 Hb_000367_090 Hb_000684_500--Hb_000367_090 Hb_000684_500--Hb_008948_020 Hb_004705_170 Hb_004705_170 Hb_000684_500--Hb_004705_170 Hb_000699_150 Hb_000699_150 Hb_000684_500--Hb_000699_150 Hb_015099_030 Hb_015099_030 Hb_000684_500--Hb_015099_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.00376 17.5201 17.7094 20.1139 4.76656 10.1467
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.75081 9.86472 11.1892 20.233 19.4143

CAGE analysis