Hb_015099_030

Information

Type -
Description -
Location Contig15099: 30320-36945
Sequence    

Annotation

kegg
ID mtr:MTR_3g096860
description hypothetical protein
nr
ID XP_012092075.1
description PREDICTED: uncharacterized protein LOC105649867 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LJ52
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19485 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12736: 30325-38663 , PASA_asmbl_12737: 30344-38683
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015099_030 0.0 - - PREDICTED: uncharacterized protein LOC105649867 [Jatropha curcas]
2 Hb_004957_030 0.0713707716 - - hydroxyproline-rich glycoprotein [Populus trichocarpa]
3 Hb_007545_010 0.0789023219 - - HIV-1 rev binding protein, hrbl, putative [Ricinus communis]
4 Hb_002006_150 0.0791500656 - - copine, putative [Ricinus communis]
5 Hb_002774_190 0.082840835 - - Endoplasmic reticulum-Golgi intermediate compartment protein, putative [Ricinus communis]
6 Hb_012733_040 0.0830558825 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
7 Hb_002883_030 0.083123179 - - PREDICTED: uncharacterized protein LOC105638222 [Jatropha curcas]
8 Hb_005015_060 0.0841036925 - - PREDICTED: developmentally-regulated G-protein 3 [Jatropha curcas]
9 Hb_000139_080 0.0852031863 - - PREDICTED: vacuole membrane protein KMS1 isoform X2 [Jatropha curcas]
10 Hb_001141_240 0.0857496301 - - PREDICTED: folate-biopterin transporter 1, chloroplastic [Jatropha curcas]
11 Hb_134849_010 0.0861427815 - - ATP synthase subunit d, putative [Ricinus communis]
12 Hb_006970_020 0.0872309829 - - PREDICTED: DNA topoisomerase 6 subunit B [Jatropha curcas]
13 Hb_024184_010 0.0872885487 - - PREDICTED: clustered mitochondria protein-like isoform X1 [Citrus sinensis]
14 Hb_000212_120 0.0884088457 - - hypothetical protein JCGZ_18070 [Jatropha curcas]
15 Hb_011224_050 0.0898008391 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Populus euphratica]
16 Hb_028487_070 0.0899668283 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002639_030 0.0902214941 - - PREDICTED: prolyl endopeptidase [Jatropha curcas]
18 Hb_002928_090 0.0904677522 - - PREDICTED: metallocarboxypeptidase A-like protein TRV_02598 [Jatropha curcas]
19 Hb_000787_160 0.0905463212 - - PREDICTED: GDP-mannose transporter GONST1 isoform X1 [Jatropha curcas]
20 Hb_000684_500 0.0906772018 - - receptor serine-threonine protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_015099_030 Hb_015099_030 Hb_004957_030 Hb_004957_030 Hb_015099_030--Hb_004957_030 Hb_007545_010 Hb_007545_010 Hb_015099_030--Hb_007545_010 Hb_002006_150 Hb_002006_150 Hb_015099_030--Hb_002006_150 Hb_002774_190 Hb_002774_190 Hb_015099_030--Hb_002774_190 Hb_012733_040 Hb_012733_040 Hb_015099_030--Hb_012733_040 Hb_002883_030 Hb_002883_030 Hb_015099_030--Hb_002883_030 Hb_001080_300 Hb_001080_300 Hb_004957_030--Hb_001080_300 Hb_001141_240 Hb_001141_240 Hb_004957_030--Hb_001141_240 Hb_004957_030--Hb_007545_010 Hb_006970_020 Hb_006970_020 Hb_004957_030--Hb_006970_020 Hb_001627_040 Hb_001627_040 Hb_004957_030--Hb_001627_040 Hb_003777_030 Hb_003777_030 Hb_007545_010--Hb_003777_030 Hb_000815_300 Hb_000815_300 Hb_007545_010--Hb_000815_300 Hb_011310_110 Hb_011310_110 Hb_007545_010--Hb_011310_110 Hb_007545_010--Hb_006970_020 Hb_000665_170 Hb_000665_170 Hb_007545_010--Hb_000665_170 Hb_000139_080 Hb_000139_080 Hb_007545_010--Hb_000139_080 Hb_006824_010 Hb_006824_010 Hb_002006_150--Hb_006824_010 Hb_002006_150--Hb_000139_080 Hb_000078_140 Hb_000078_140 Hb_002006_150--Hb_000078_140 Hb_002675_250 Hb_002675_250 Hb_002006_150--Hb_002675_250 Hb_000101_390 Hb_000101_390 Hb_002006_150--Hb_000101_390 Hb_000212_120 Hb_000212_120 Hb_002774_190--Hb_000212_120 Hb_028487_070 Hb_028487_070 Hb_002774_190--Hb_028487_070 Hb_032202_220 Hb_032202_220 Hb_002774_190--Hb_032202_220 Hb_134849_010 Hb_134849_010 Hb_002774_190--Hb_134849_010 Hb_000375_390 Hb_000375_390 Hb_002774_190--Hb_000375_390 Hb_000061_180 Hb_000061_180 Hb_002774_190--Hb_000061_180 Hb_001242_120 Hb_001242_120 Hb_012733_040--Hb_001242_120 Hb_001195_400 Hb_001195_400 Hb_012733_040--Hb_001195_400 Hb_002301_100 Hb_002301_100 Hb_012733_040--Hb_002301_100 Hb_000364_050 Hb_000364_050 Hb_012733_040--Hb_000364_050 Hb_004452_120 Hb_004452_120 Hb_012733_040--Hb_004452_120 Hb_003159_050 Hb_003159_050 Hb_012733_040--Hb_003159_050 Hb_000345_160 Hb_000345_160 Hb_002883_030--Hb_000345_160 Hb_000300_270 Hb_000300_270 Hb_002883_030--Hb_000300_270 Hb_002897_090 Hb_002897_090 Hb_002883_030--Hb_002897_090 Hb_001662_100 Hb_001662_100 Hb_002883_030--Hb_001662_100 Hb_000049_020 Hb_000049_020 Hb_002883_030--Hb_000049_020 Hb_004037_020 Hb_004037_020 Hb_002883_030--Hb_004037_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.30999 4.21735 6.94253 8.78456 2.18888 4.61231
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.10672 3.81652 2.31372 5.96891 8.79325

CAGE analysis