Hb_011310_110

Information

Type -
Description -
Location Contig11310: 44460-45509
Sequence    

Annotation

kegg
ID rcu:RCOM_0924370
description Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor, putative
nr
ID XP_012076592.1
description PREDICTED: probable sugar phosphate/phosphate translocator At5g25400 isoform X1 [Jatropha curcas]
swissprot
ID Q3E6T0
description Probable sugar phosphate/phosphate translocator At5g25400 OS=Arabidopsis thaliana GN=At5g25400 PE=2 SV=1
trembl
ID B9RP61
description Triose phosphate/phosphate translocator, non-green plastid, chloroplast, putative OS=Ricinus communis GN=RCOM_0924370 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable sugar phosphate phosphate translocator at5g25400

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03907: 43932-45627
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011310_110 0.0 - - PREDICTED: probable sugar phosphate/phosphate translocator At5g25400 isoform X1 [Jatropha curcas]
2 Hb_010672_020 0.0463836768 - - PREDICTED: ATP synthase gamma chain, chloroplastic-like [Jatropha curcas]
3 Hb_006120_050 0.0545142472 - - PREDICTED: importin subunit alpha-4-like [Jatropha curcas]
4 Hb_007545_010 0.0703660176 - - HIV-1 rev binding protein, hrbl, putative [Ricinus communis]
5 Hb_000049_020 0.0707734087 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
6 Hb_000705_230 0.0731734554 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 2 [Jatropha curcas]
7 Hb_000665_170 0.0769567559 - - PREDICTED: probable beta-1,3-galactosyltransferase 10 [Jatropha curcas]
8 Hb_005977_100 0.0783874247 - - PREDICTED: tetraspanin-18 [Jatropha curcas]
9 Hb_001246_130 0.0820028335 - - PREDICTED: NAD-dependent malic enzyme 62 kDa isoform, mitochondrial [Jatropha curcas]
10 Hb_000703_190 0.0824224407 - - PREDICTED: serine/threonine-protein kinase EDR1 isoform X1 [Jatropha curcas]
11 Hb_032202_220 0.0828664145 - - ring finger protein, putative [Ricinus communis]
12 Hb_030982_010 0.0838585367 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001863_360 0.0854349736 - - PREDICTED: 5'-adenylylsulfate reductase-like 4 [Jatropha curcas]
14 Hb_000815_300 0.0856093194 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
15 Hb_002272_240 0.0860351467 - - catalytic, putative [Ricinus communis]
16 Hb_001876_040 0.0864296368 - - PREDICTED: mucin-5B [Jatropha curcas]
17 Hb_000139_080 0.0864815267 - - PREDICTED: vacuole membrane protein KMS1 isoform X2 [Jatropha curcas]
18 Hb_001157_230 0.0871785446 - - Protein AFR, putative [Ricinus communis]
19 Hb_000212_420 0.0871933567 - - PREDICTED: probable protein phosphatase 2C 33 [Jatropha curcas]
20 Hb_005214_140 0.0878524359 - - PREDICTED: transcription factor GTE2-like [Jatropha curcas]

Gene co-expression network

sample Hb_011310_110 Hb_011310_110 Hb_010672_020 Hb_010672_020 Hb_011310_110--Hb_010672_020 Hb_006120_050 Hb_006120_050 Hb_011310_110--Hb_006120_050 Hb_007545_010 Hb_007545_010 Hb_011310_110--Hb_007545_010 Hb_000049_020 Hb_000049_020 Hb_011310_110--Hb_000049_020 Hb_000705_230 Hb_000705_230 Hb_011310_110--Hb_000705_230 Hb_000665_170 Hb_000665_170 Hb_011310_110--Hb_000665_170 Hb_010672_020--Hb_000705_230 Hb_010672_020--Hb_000665_170 Hb_000395_110 Hb_000395_110 Hb_010672_020--Hb_000395_110 Hb_010672_020--Hb_007545_010 Hb_010672_020--Hb_006120_050 Hb_030982_010 Hb_030982_010 Hb_006120_050--Hb_030982_010 Hb_002272_240 Hb_002272_240 Hb_006120_050--Hb_002272_240 Hb_002687_180 Hb_002687_180 Hb_006120_050--Hb_002687_180 Hb_121089_030 Hb_121089_030 Hb_006120_050--Hb_121089_030 Hb_003777_030 Hb_003777_030 Hb_007545_010--Hb_003777_030 Hb_000815_300 Hb_000815_300 Hb_007545_010--Hb_000815_300 Hb_006970_020 Hb_006970_020 Hb_007545_010--Hb_006970_020 Hb_007545_010--Hb_000665_170 Hb_000139_080 Hb_000139_080 Hb_007545_010--Hb_000139_080 Hb_000300_270 Hb_000300_270 Hb_000049_020--Hb_000300_270 Hb_000345_160 Hb_000345_160 Hb_000049_020--Hb_000345_160 Hb_000256_150 Hb_000256_150 Hb_000049_020--Hb_000256_150 Hb_004102_170 Hb_004102_170 Hb_000049_020--Hb_004102_170 Hb_002883_030 Hb_002883_030 Hb_000049_020--Hb_002883_030 Hb_000215_300 Hb_000215_300 Hb_000049_020--Hb_000215_300 Hb_001633_200 Hb_001633_200 Hb_000705_230--Hb_001633_200 Hb_000703_190 Hb_000703_190 Hb_000705_230--Hb_000703_190 Hb_000197_020 Hb_000197_020 Hb_000705_230--Hb_000197_020 Hb_000069_640 Hb_000069_640 Hb_000705_230--Hb_000069_640 Hb_000256_230 Hb_000256_230 Hb_000665_170--Hb_000256_230 Hb_000665_170--Hb_003777_030 Hb_003209_130 Hb_003209_130 Hb_000665_170--Hb_003209_130 Hb_000389_030 Hb_000389_030 Hb_000665_170--Hb_000389_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
62.2554 69.0701 103.609 154.476 47.7233 49.9145
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
46.5605 40.5611 55.9081 68.7134 98.8177

CAGE analysis