Hb_001633_200

Information

Type -
Description -
Location Contig1633: 164739-171334
Sequence    

Annotation

kegg
ID egr:104419104
description uncharacterized LOC104419104
nr
ID KJB30323.1
description hypothetical protein B456_005G137400 [Gossypium raimondii]
swissprot
ID Q92186
description Alpha-2,8-sialyltransferase 8B OS=Homo sapiens GN=ST8SIA2 PE=2 SV=1
trembl
ID A0A0D2PSQ8
description Gossypium raimondii chromosome 5, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_005G137400 PE=4 SV=1
Gene Ontology
ID GO:0016757
description alpha- -sialyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14901: 169462-170381 , PASA_asmbl_14902: 172272-181302
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001633_200 0.0 - - hypothetical protein B456_005G137400 [Gossypium raimondii]
2 Hb_001507_120 0.0713168247 - - transcription factor, putative [Ricinus communis]
3 Hb_000705_230 0.0743497614 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 2 [Jatropha curcas]
4 Hb_000395_280 0.083334229 - - PREDICTED: thioredoxin-related transmembrane protein 2 [Vitis vinifera]
5 Hb_000197_020 0.089252978 - - PREDICTED: protein RER1A [Jatropha curcas]
6 Hb_010672_020 0.0917405124 - - PREDICTED: ATP synthase gamma chain, chloroplastic-like [Jatropha curcas]
7 Hb_003777_200 0.0928158341 - - PREDICTED: uncharacterized protein LOC105640933 [Jatropha curcas]
8 Hb_000072_300 0.0930017198 - - PREDICTED: probable galacturonosyltransferase 9 [Jatropha curcas]
9 Hb_065968_010 0.0982659251 - - PREDICTED: probable glycosyltransferase At3g07620 isoform X2 [Jatropha curcas]
10 Hb_000244_180 0.1006667478 - - conserved hypothetical protein [Ricinus communis]
11 Hb_011310_110 0.1010249372 - - PREDICTED: probable sugar phosphate/phosphate translocator At5g25400 isoform X1 [Jatropha curcas]
12 Hb_007638_020 0.1019593701 - - PREDICTED: low-temperature-induced cysteine proteinase-like [Jatropha curcas]
13 Hb_000260_460 0.1030820999 - - Ethanolamine-phosphate cytidylyltransferase, putative [Ricinus communis]
14 Hb_004032_320 0.1044187492 - - PREDICTED: uncharacterized protein LOC105635153 [Jatropha curcas]
15 Hb_000317_040 0.104664595 - - PREDICTED: xylosyltransferase 1-like [Jatropha curcas]
16 Hb_000078_140 0.104780627 - - PREDICTED: WD repeat-containing protein 11 [Jatropha curcas]
17 Hb_121881_010 0.1048111346 - - hypothetical protein POPTR_0015s15770g [Populus trichocarpa]
18 Hb_159809_070 0.1063767305 - - phospholipase A-2-activating protein, putative [Ricinus communis]
19 Hb_171215_010 0.1066919806 - - vesicle-associated membrane protein, putative [Ricinus communis]
20 Hb_079526_040 0.1072472521 - - Conserved oligomeric Golgi complex component, putative [Ricinus communis]

Gene co-expression network

sample Hb_001633_200 Hb_001633_200 Hb_001507_120 Hb_001507_120 Hb_001633_200--Hb_001507_120 Hb_000705_230 Hb_000705_230 Hb_001633_200--Hb_000705_230 Hb_000395_280 Hb_000395_280 Hb_001633_200--Hb_000395_280 Hb_000197_020 Hb_000197_020 Hb_001633_200--Hb_000197_020 Hb_010672_020 Hb_010672_020 Hb_001633_200--Hb_010672_020 Hb_003777_200 Hb_003777_200 Hb_001633_200--Hb_003777_200 Hb_001957_010 Hb_001957_010 Hb_001507_120--Hb_001957_010 Hb_065968_010 Hb_065968_010 Hb_001507_120--Hb_065968_010 Hb_001507_120--Hb_000395_280 Hb_001507_120--Hb_003777_200 Hb_000260_510 Hb_000260_510 Hb_001507_120--Hb_000260_510 Hb_000705_230--Hb_010672_020 Hb_011310_110 Hb_011310_110 Hb_000705_230--Hb_011310_110 Hb_000703_190 Hb_000703_190 Hb_000705_230--Hb_000703_190 Hb_000705_230--Hb_000197_020 Hb_000069_640 Hb_000069_640 Hb_000705_230--Hb_000069_640 Hb_003605_020 Hb_003605_020 Hb_000395_280--Hb_003605_020 Hb_005754_040 Hb_005754_040 Hb_000395_280--Hb_005754_040 Hb_000395_280--Hb_065968_010 Hb_000395_280--Hb_001957_010 Hb_002552_040 Hb_002552_040 Hb_000395_280--Hb_002552_040 Hb_001227_120 Hb_001227_120 Hb_000395_280--Hb_001227_120 Hb_000066_030 Hb_000066_030 Hb_000197_020--Hb_000066_030 Hb_003998_040 Hb_003998_040 Hb_000197_020--Hb_003998_040 Hb_004055_120 Hb_004055_120 Hb_000197_020--Hb_004055_120 Hb_010407_140 Hb_010407_140 Hb_000197_020--Hb_010407_140 Hb_011214_160 Hb_011214_160 Hb_000197_020--Hb_011214_160 Hb_010672_020--Hb_011310_110 Hb_000665_170 Hb_000665_170 Hb_010672_020--Hb_000665_170 Hb_000395_110 Hb_000395_110 Hb_010672_020--Hb_000395_110 Hb_007545_010 Hb_007545_010 Hb_010672_020--Hb_007545_010 Hb_006120_050 Hb_006120_050 Hb_010672_020--Hb_006120_050 Hb_000317_040 Hb_000317_040 Hb_003777_200--Hb_000317_040 Hb_000046_500 Hb_000046_500 Hb_003777_200--Hb_000046_500 Hb_000300_600 Hb_000300_600 Hb_003777_200--Hb_000300_600 Hb_003777_200--Hb_011214_160 Hb_001703_050 Hb_001703_050 Hb_003777_200--Hb_001703_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.35791 0.844776 2.88993 3.17106 0.799828 1.19644
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.777766 1.05981 1.87547 1.56564 2.12256

CAGE analysis