Hb_003777_200

Information

Type -
Description -
Location Contig3777: 278840-282720
Sequence    

Annotation

kegg
ID rcu:RCOM_0959330
description hypothetical protein
nr
ID XP_012080735.1
description PREDICTED: uncharacterized protein LOC105640933 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K3T5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15186 PE=4 SV=1
Gene Ontology
ID GO:0009506
description sphingomyelin synthetase family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38452: 278743-281315 , PASA_asmbl_38453: 278920-282734
cDNA
(Sanger)
(ID:Location)		 048_F13.ab1: 278743-281092

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003777_200 0.0 - - PREDICTED: uncharacterized protein LOC105640933 [Jatropha curcas]
2 Hb_000317_040 0.063917127 - - PREDICTED: xylosyltransferase 1-like [Jatropha curcas]
3 Hb_000046_500 0.0738600854 - - PREDICTED: probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2 [Jatropha curcas]
4 Hb_000300_600 0.0749098331 - - tubulin alpha chain, putative [Ricinus communis]
5 Hb_011214_160 0.0842901859 - - PREDICTED: coatomer subunit delta [Jatropha curcas]
6 Hb_001703_050 0.0846437025 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
7 Hb_001507_120 0.085437425 - - transcription factor, putative [Ricinus communis]
8 Hb_000703_190 0.0879043555 - - PREDICTED: serine/threonine-protein kinase EDR1 isoform X1 [Jatropha curcas]
9 Hb_019181_040 0.089136838 - - component of oligomeric golgi complex, putative [Ricinus communis]
10 Hb_000705_230 0.0905577734 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 2 [Jatropha curcas]
11 Hb_000854_040 0.092556329 - - PREDICTED: GPI mannosyltransferase 3 [Jatropha curcas]
12 Hb_007416_210 0.0925922615 - - PREDICTED: coatomer subunit beta-1 [Jatropha curcas]
13 Hb_001633_200 0.0928158341 - - hypothetical protein B456_005G137400 [Gossypium raimondii]
14 Hb_000101_080 0.0940411024 - - PREDICTED: protein CREG1 [Jatropha curcas]
15 Hb_079526_040 0.0941961838 - - Conserved oligomeric Golgi complex component, putative [Ricinus communis]
16 Hb_000477_100 0.094440819 - - PREDICTED: GDP-mannose transporter GONST4 [Jatropha curcas]
17 Hb_000371_090 0.0956659475 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit-like [Jatropha curcas]
18 Hb_003206_090 0.0958970145 - - PREDICTED: protein trichome birefringence-like 5 [Jatropha curcas]
19 Hb_000352_300 0.0975101973 - - PREDICTED: eukaryotic peptide chain release factor subunit 1-3 [Jatropha curcas]
20 Hb_003998_040 0.0979775138 - - organic anion transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_003777_200 Hb_003777_200 Hb_000317_040 Hb_000317_040 Hb_003777_200--Hb_000317_040 Hb_000046_500 Hb_000046_500 Hb_003777_200--Hb_000046_500 Hb_000300_600 Hb_000300_600 Hb_003777_200--Hb_000300_600 Hb_011214_160 Hb_011214_160 Hb_003777_200--Hb_011214_160 Hb_001703_050 Hb_001703_050 Hb_003777_200--Hb_001703_050 Hb_001507_120 Hb_001507_120 Hb_003777_200--Hb_001507_120 Hb_000703_190 Hb_000703_190 Hb_000317_040--Hb_000703_190 Hb_019181_040 Hb_019181_040 Hb_000317_040--Hb_019181_040 Hb_002326_040 Hb_002326_040 Hb_000317_040--Hb_002326_040 Hb_000317_040--Hb_000046_500 Hb_012506_030 Hb_012506_030 Hb_000317_040--Hb_012506_030 Hb_000046_500--Hb_019181_040 Hb_007481_010 Hb_007481_010 Hb_000046_500--Hb_007481_010 Hb_000477_100 Hb_000477_100 Hb_000046_500--Hb_000477_100 Hb_002989_020 Hb_002989_020 Hb_000046_500--Hb_002989_020 Hb_079526_040 Hb_079526_040 Hb_000046_500--Hb_079526_040 Hb_002071_070 Hb_002071_070 Hb_000046_500--Hb_002071_070 Hb_000371_090 Hb_000371_090 Hb_000300_600--Hb_000371_090 Hb_000300_600--Hb_001507_120 Hb_007904_210 Hb_007904_210 Hb_000300_600--Hb_007904_210 Hb_001269_330 Hb_001269_330 Hb_000300_600--Hb_001269_330 Hb_003206_090 Hb_003206_090 Hb_000300_600--Hb_003206_090 Hb_003998_040 Hb_003998_040 Hb_011214_160--Hb_003998_040 Hb_011214_160--Hb_001703_050 Hb_011214_160--Hb_000371_090 Hb_001051_070 Hb_001051_070 Hb_011214_160--Hb_001051_070 Hb_000197_020 Hb_000197_020 Hb_011214_160--Hb_000197_020 Hb_000139_530 Hb_000139_530 Hb_011214_160--Hb_000139_530 Hb_001269_600 Hb_001269_600 Hb_001703_050--Hb_001269_600 Hb_003994_220 Hb_003994_220 Hb_001703_050--Hb_003994_220 Hb_065500_020 Hb_065500_020 Hb_001703_050--Hb_065500_020 Hb_000352_300 Hb_000352_300 Hb_001703_050--Hb_000352_300 Hb_000184_070 Hb_000184_070 Hb_001703_050--Hb_000184_070 Hb_001633_200 Hb_001633_200 Hb_001507_120--Hb_001633_200 Hb_001957_010 Hb_001957_010 Hb_001507_120--Hb_001957_010 Hb_065968_010 Hb_065968_010 Hb_001507_120--Hb_065968_010 Hb_000395_280 Hb_000395_280 Hb_001507_120--Hb_000395_280 Hb_000260_510 Hb_000260_510 Hb_001507_120--Hb_000260_510
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.25439 6.03454 12.0969 17.164 7.47882 6.16122
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.11598 4.25764 12.042 10.1533 10.1436

CAGE analysis