Hb_003206_090

Information

Type -
Description -
Location Contig3206: 149921-154698
Sequence    

Annotation

kegg
ID rcu:RCOM_0582920
description hypothetical protein
nr
ID XP_012074628.1
description PREDICTED: protein trichome birefringence-like 5 [Jatropha curcas]
swissprot
ID F4K5K4
description Protein trichome birefringence-like 5 OS=Arabidopsis thaliana GN=TBL5 PE=2 SV=1
trembl
ID A0A067KIC0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10642 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33875: 150227-154525 , PASA_asmbl_33876: 152925-153189
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003206_090 0.0 - - PREDICTED: protein trichome birefringence-like 5 [Jatropha curcas]
2 Hb_000352_120 0.0879594894 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105630380 [Jatropha curcas]
3 Hb_003777_200 0.0958970145 - - PREDICTED: uncharacterized protein LOC105640933 [Jatropha curcas]
4 Hb_002473_050 0.0975407423 - - catalytic, putative [Ricinus communis]
5 Hb_000317_040 0.1019662503 - - PREDICTED: xylosyltransferase 1-like [Jatropha curcas]
6 Hb_007904_210 0.1019979718 - - PREDICTED: oxysterol-binding protein-related protein 1D [Jatropha curcas]
7 Hb_000300_600 0.1021952393 - - tubulin alpha chain, putative [Ricinus communis]
8 Hb_001143_190 0.1026332944 - - PREDICTED: uncharacterized protein LOC105638976 [Jatropha curcas]
9 Hb_002351_030 0.1076611772 - - catalytic, putative [Ricinus communis]
10 Hb_001512_040 0.1082408433 - - PREDICTED: probable methyltransferase PMT9 [Jatropha curcas]
11 Hb_000101_080 0.1115191985 - - PREDICTED: protein CREG1 [Jatropha curcas]
12 Hb_010294_010 0.1134435356 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B [Jatropha curcas]
13 Hb_000522_170 0.114342544 - - PREDICTED: phosphatidylinositol:ceramide inositolphosphotransferase 1 [Jatropha curcas]
14 Hb_003912_030 0.1160928097 - - PREDICTED: uncharacterized protein LOC105638204 [Jatropha curcas]
15 Hb_001789_030 0.117058251 - - PREDICTED: signal peptide peptidase-like 1 [Jatropha curcas]
16 Hb_000371_090 0.1171994597 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit-like [Jatropha curcas]
17 Hb_033286_010 0.1175791807 - - PREDICTED: probable beta-1,3-galactosyltransferase 14 [Jatropha curcas]
18 Hb_001269_330 0.1179494931 - - PREDICTED: uncharacterized protein LOC105645377 [Jatropha curcas]
19 Hb_000261_210 0.1180319652 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
20 Hb_007982_030 0.1183463307 - - PREDICTED: probable inactive receptor kinase At5g10020 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003206_090 Hb_003206_090 Hb_000352_120 Hb_000352_120 Hb_003206_090--Hb_000352_120 Hb_003777_200 Hb_003777_200 Hb_003206_090--Hb_003777_200 Hb_002473_050 Hb_002473_050 Hb_003206_090--Hb_002473_050 Hb_000317_040 Hb_000317_040 Hb_003206_090--Hb_000317_040 Hb_007904_210 Hb_007904_210 Hb_003206_090--Hb_007904_210 Hb_000300_600 Hb_000300_600 Hb_003206_090--Hb_000300_600 Hb_001004_070 Hb_001004_070 Hb_000352_120--Hb_001004_070 Hb_000062_540 Hb_000062_540 Hb_000352_120--Hb_000062_540 Hb_001936_130 Hb_001936_130 Hb_000352_120--Hb_001936_130 Hb_001269_330 Hb_001269_330 Hb_000352_120--Hb_001269_330 Hb_027380_220 Hb_027380_220 Hb_000352_120--Hb_027380_220 Hb_003777_200--Hb_000317_040 Hb_000046_500 Hb_000046_500 Hb_003777_200--Hb_000046_500 Hb_003777_200--Hb_000300_600 Hb_011214_160 Hb_011214_160 Hb_003777_200--Hb_011214_160 Hb_001703_050 Hb_001703_050 Hb_003777_200--Hb_001703_050 Hb_001507_120 Hb_001507_120 Hb_003777_200--Hb_001507_120 Hb_000261_210 Hb_000261_210 Hb_002473_050--Hb_000261_210 Hb_000054_040 Hb_000054_040 Hb_002473_050--Hb_000054_040 Hb_025668_010 Hb_025668_010 Hb_002473_050--Hb_025668_010 Hb_000101_080 Hb_000101_080 Hb_002473_050--Hb_000101_080 Hb_007982_030 Hb_007982_030 Hb_002473_050--Hb_007982_030 Hb_002351_030 Hb_002351_030 Hb_002473_050--Hb_002351_030 Hb_000703_190 Hb_000703_190 Hb_000317_040--Hb_000703_190 Hb_019181_040 Hb_019181_040 Hb_000317_040--Hb_019181_040 Hb_002326_040 Hb_002326_040 Hb_000317_040--Hb_002326_040 Hb_000317_040--Hb_000046_500 Hb_012506_030 Hb_012506_030 Hb_000317_040--Hb_012506_030 Hb_007904_210--Hb_000300_600 Hb_000072_090 Hb_000072_090 Hb_007904_210--Hb_000072_090 Hb_000371_090 Hb_000371_090 Hb_007904_210--Hb_000371_090 Hb_000022_200 Hb_000022_200 Hb_007904_210--Hb_000022_200 Hb_000556_150 Hb_000556_150 Hb_007904_210--Hb_000556_150 Hb_000300_600--Hb_000371_090 Hb_000300_600--Hb_001507_120 Hb_000300_600--Hb_001269_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.88565 4.12589 9.4339 12.1412 10.8269 5.81702
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.54884 3.19425 10.5042 6.50445 7.33591

CAGE analysis