Hb_027380_220

Information

Type -
Description -
Location Contig27380: 221540-230752
Sequence    

Annotation

kegg
ID rcu:RCOM_1288390
description transferase, transferring glycosyl groups, putative (EC:2.4.1.134)
nr
ID XP_012072180.1
description PREDICTED: probable beta-1,3-galactosyltransferase 20 [Jatropha curcas]
swissprot
ID A7XDQ9
description Probable beta-1,3-galactosyltransferase 20 OS=Arabidopsis thaliana GN=B3GALT20 PE=2 SV=1
trembl
ID B9SYI3
description Transferase, transferring glycosyl groups, putative OS=Ricinus communis GN=RCOM_1288390 PE=4 SV=1
Gene Ontology
ID GO:0016020
description probable beta- -galactosyltransferase 20

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28617: 221491-230754
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027380_220 0.0 - - PREDICTED: probable beta-1,3-galactosyltransferase 20 [Jatropha curcas]
2 Hb_000260_010 0.0650481358 - - PREDICTED: phospholipid-transporting ATPase 1-like [Jatropha curcas]
3 Hb_001936_130 0.0685877359 - - PREDICTED: signal recognition particle receptor subunit beta-like [Jatropha curcas]
4 Hb_005291_050 0.0717649513 - - PREDICTED: mannan endo-1,4-beta-mannosidase 6-like isoform X1 [Jatropha curcas]
5 Hb_029879_070 0.0748123624 - - PREDICTED: phospholipase A I [Jatropha curcas]
6 Hb_001004_070 0.0751145504 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001912_110 0.0755283602 - - PREDICTED: protoheme IX farnesyltransferase, mitochondrial isoform X1 [Jatropha curcas]
8 Hb_004109_080 0.0769012129 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 15-like isoform X1 [Populus euphratica]
9 Hb_003025_100 0.078687469 - - PREDICTED: serine/threonine-protein phosphatase 5 isoform X2 [Jatropha curcas]
10 Hb_004627_040 0.0814704806 - - hypothetical protein POPTR_0010s22770g [Populus trichocarpa]
11 Hb_001163_100 0.0816252257 - - serine/threonine protein kinase, putative [Ricinus communis]
12 Hb_009328_020 0.0849457328 - - conserved hypothetical protein [Ricinus communis]
13 Hb_012498_010 0.0853220393 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM44-2 [Jatropha curcas]
14 Hb_000254_090 0.085882301 - - PREDICTED: la protein 2 [Jatropha curcas]
15 Hb_000340_230 0.0886022664 - - synapse-associated protein, putative [Ricinus communis]
16 Hb_091296_010 0.0895241921 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
17 Hb_029510_050 0.0896070957 - - PREDICTED: golgin candidate 5 [Jatropha curcas]
18 Hb_008246_060 0.0904559945 - - hypothetical protein F383_01577 [Gossypium arboreum]
19 Hb_024128_020 0.0921774094 - - PREDICTED: vacuolar cation/proton exchanger 5-like isoform X1 [Jatropha curcas]
20 Hb_000072_320 0.0927264427 - - PREDICTED: E3 ubiquitin-protein ligase RLIM-like [Jatropha curcas]

Gene co-expression network

sample Hb_027380_220 Hb_027380_220 Hb_000260_010 Hb_000260_010 Hb_027380_220--Hb_000260_010 Hb_001936_130 Hb_001936_130 Hb_027380_220--Hb_001936_130 Hb_005291_050 Hb_005291_050 Hb_027380_220--Hb_005291_050 Hb_029879_070 Hb_029879_070 Hb_027380_220--Hb_029879_070 Hb_001004_070 Hb_001004_070 Hb_027380_220--Hb_001004_070 Hb_001912_110 Hb_001912_110 Hb_027380_220--Hb_001912_110 Hb_001163_100 Hb_001163_100 Hb_000260_010--Hb_001163_100 Hb_002809_050 Hb_002809_050 Hb_000260_010--Hb_002809_050 Hb_000260_010--Hb_001912_110 Hb_001377_490 Hb_001377_490 Hb_000260_010--Hb_001377_490 Hb_164010_030 Hb_164010_030 Hb_000260_010--Hb_164010_030 Hb_001936_130--Hb_001004_070 Hb_091296_010 Hb_091296_010 Hb_001936_130--Hb_091296_010 Hb_003025_100 Hb_003025_100 Hb_001936_130--Hb_003025_100 Hb_012498_010 Hb_012498_010 Hb_001936_130--Hb_012498_010 Hb_001936_130--Hb_000260_010 Hb_005291_050--Hb_012498_010 Hb_001902_030 Hb_001902_030 Hb_005291_050--Hb_001902_030 Hb_004109_080 Hb_004109_080 Hb_005291_050--Hb_004109_080 Hb_000156_010 Hb_000156_010 Hb_005291_050--Hb_000156_010 Hb_002263_020 Hb_002263_020 Hb_005291_050--Hb_002263_020 Hb_000254_090 Hb_000254_090 Hb_005291_050--Hb_000254_090 Hb_029879_070--Hb_000254_090 Hb_029510_050 Hb_029510_050 Hb_029879_070--Hb_029510_050 Hb_006275_070 Hb_006275_070 Hb_029879_070--Hb_006275_070 Hb_002685_210 Hb_002685_210 Hb_029879_070--Hb_002685_210 Hb_029879_070--Hb_005291_050 Hb_001004_070--Hb_005291_050 Hb_001004_070--Hb_003025_100 Hb_001004_070--Hb_012498_010 Hb_024128_020 Hb_024128_020 Hb_001004_070--Hb_024128_020 Hb_000096_140 Hb_000096_140 Hb_001912_110--Hb_000096_140 Hb_000260_350 Hb_000260_350 Hb_001912_110--Hb_000260_350 Hb_000349_260 Hb_000349_260 Hb_001912_110--Hb_000349_260 Hb_000925_130 Hb_000925_130 Hb_001912_110--Hb_000925_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.66271 5.51595 5.93597 15.2477 11.006 9.32058
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.00836 9.83611 12.164 8.84072 12.8632

CAGE analysis