Hb_002809_050

Information

Type -
Description -
Location Contig2809: 43169-50400
Sequence    

Annotation

kegg
ID rcu:RCOM_1682520
description WD-repeat protein, putative
nr
ID XP_012087035.1
description PREDICTED: protein FIZZY-RELATED 2 [Jatropha curcas]
swissprot
ID Q8L3Z8
description Protein FIZZY-RELATED 2 OS=Arabidopsis thaliana GN=FZR2 PE=1 SV=1
trembl
ID A0A067JNS5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20693 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29328: 43197-50496
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002809_050 0.0 - - PREDICTED: protein FIZZY-RELATED 2 [Jatropha curcas]
2 Hb_022115_020 0.0621442982 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11 isoform X2 [Jatropha curcas]
3 Hb_000260_010 0.0661401979 - - PREDICTED: phospholipid-transporting ATPase 1-like [Jatropha curcas]
4 Hb_000213_010 0.0743901712 - - PREDICTED: villin-3-like isoform X1 [Populus euphratica]
5 Hb_006634_070 0.07441667 - - PREDICTED: calcium-dependent protein kinase 13 [Jatropha curcas]
6 Hb_003177_030 0.0753074135 - - PREDICTED: uncharacterized protein LOC105635357 [Jatropha curcas]
7 Hb_006938_080 0.075681976 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
8 Hb_001377_490 0.0803349075 - - PREDICTED: uncharacterized protein LOC105642821 [Jatropha curcas]
9 Hb_012022_090 0.0809130395 - - PREDICTED: LIMR family protein At5g01460 [Gossypium raimondii]
10 Hb_001696_010 0.0811276833 - - PREDICTED: serine/threonine-protein kinase 38-like isoform X3 [Jatropha curcas]
11 Hb_001912_110 0.081295007 - - PREDICTED: protoheme IX farnesyltransferase, mitochondrial isoform X1 [Jatropha curcas]
12 Hb_000003_250 0.0827669232 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]
13 Hb_023344_120 0.0827978871 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial [Jatropha curcas]
14 Hb_000749_220 0.0830888269 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X1 [Jatropha curcas]
15 Hb_006915_030 0.0842634486 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 8 [Jatropha curcas]
16 Hb_006017_010 0.084639818 - - PREDICTED: alkylated DNA repair protein alkB homolog 8 [Jatropha curcas]
17 Hb_001004_070 0.0849216891 - - conserved hypothetical protein [Ricinus communis]
18 Hb_005144_160 0.0854787185 - - PREDICTED: uncharacterized protein LOC105628018 isoform X1 [Jatropha curcas]
19 Hb_000646_050 0.087597524 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 22-like [Jatropha curcas]
20 Hb_155159_020 0.0877053234 - - PREDICTED: clathrin light chain 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_002809_050 Hb_002809_050 Hb_022115_020 Hb_022115_020 Hb_002809_050--Hb_022115_020 Hb_000260_010 Hb_000260_010 Hb_002809_050--Hb_000260_010 Hb_000213_010 Hb_000213_010 Hb_002809_050--Hb_000213_010 Hb_006634_070 Hb_006634_070 Hb_002809_050--Hb_006634_070 Hb_003177_030 Hb_003177_030 Hb_002809_050--Hb_003177_030 Hb_006938_080 Hb_006938_080 Hb_002809_050--Hb_006938_080 Hb_001511_060 Hb_001511_060 Hb_022115_020--Hb_001511_060 Hb_155159_020 Hb_155159_020 Hb_022115_020--Hb_155159_020 Hb_002110_190 Hb_002110_190 Hb_022115_020--Hb_002110_190 Hb_000028_180 Hb_000028_180 Hb_022115_020--Hb_000028_180 Hb_000603_150 Hb_000603_150 Hb_022115_020--Hb_000603_150 Hb_001163_100 Hb_001163_100 Hb_000260_010--Hb_001163_100 Hb_027380_220 Hb_027380_220 Hb_000260_010--Hb_027380_220 Hb_001912_110 Hb_001912_110 Hb_000260_010--Hb_001912_110 Hb_001377_490 Hb_001377_490 Hb_000260_010--Hb_001377_490 Hb_164010_030 Hb_164010_030 Hb_000260_010--Hb_164010_030 Hb_012022_090 Hb_012022_090 Hb_000213_010--Hb_012022_090 Hb_000029_300 Hb_000029_300 Hb_000213_010--Hb_000029_300 Hb_001221_080 Hb_001221_080 Hb_000213_010--Hb_001221_080 Hb_021297_050 Hb_021297_050 Hb_000213_010--Hb_021297_050 Hb_003683_020 Hb_003683_020 Hb_000213_010--Hb_003683_020 Hb_000116_500 Hb_000116_500 Hb_000213_010--Hb_000116_500 Hb_006455_120 Hb_006455_120 Hb_006634_070--Hb_006455_120 Hb_023344_120 Hb_023344_120 Hb_006634_070--Hb_023344_120 Hb_011037_030 Hb_011037_030 Hb_006634_070--Hb_011037_030 Hb_001409_020 Hb_001409_020 Hb_006634_070--Hb_001409_020 Hb_000156_010 Hb_000156_010 Hb_006634_070--Hb_000156_010 Hb_005144_160 Hb_005144_160 Hb_006634_070--Hb_005144_160 Hb_000749_220 Hb_000749_220 Hb_003177_030--Hb_000749_220 Hb_001009_270 Hb_001009_270 Hb_003177_030--Hb_001009_270 Hb_003177_030--Hb_005144_160 Hb_000676_250 Hb_000676_250 Hb_003177_030--Hb_000676_250 Hb_001159_130 Hb_001159_130 Hb_003177_030--Hb_001159_130 Hb_000019_030 Hb_000019_030 Hb_003177_030--Hb_000019_030 Hb_000245_040 Hb_000245_040 Hb_006938_080--Hb_000245_040 Hb_000646_050 Hb_000646_050 Hb_006938_080--Hb_000646_050 Hb_000866_170 Hb_000866_170 Hb_006938_080--Hb_000866_170 Hb_000107_490 Hb_000107_490 Hb_006938_080--Hb_000107_490 Hb_000395_190 Hb_000395_190 Hb_006938_080--Hb_000395_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.48491 5.46164 4.90701 8.88175 8.06329 6.63033
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.57259 5.85384 12.4934 6.8874 5.80443

CAGE analysis