Hb_006938_080

Information

Type -
Description -
Location Contig6938: 60266-63360
Sequence    

Annotation

kegg
ID tcc:TCM_019211
description ARM repeat superfamily protein
nr
ID XP_012089902.1
description PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
swissprot
ID O22193
description U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4 PE=1 SV=3
trembl
ID A0A067JRN1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02487 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54524: 60325-63386
cDNA
(Sanger)
(ID:Location)		 028_P06.ab1: 62949-63377

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006938_080 0.0 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
2 Hb_000245_040 0.069308409 - - PREDICTED: uncharacterized protein LOC105631550 isoform X2 [Jatropha curcas]
3 Hb_002809_050 0.075681976 - - PREDICTED: protein FIZZY-RELATED 2 [Jatropha curcas]
4 Hb_000646_050 0.0767087757 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 22-like [Jatropha curcas]
5 Hb_000866_170 0.078341751 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
6 Hb_000107_490 0.0792830647 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
7 Hb_000395_190 0.0794432097 - - PREDICTED: F-box/LRR-repeat protein 7-like [Jatropha curcas]
8 Hb_000890_210 0.0795097938 - - PREDICTED: serine/threonine-protein kinase PBS1 isoform X1 [Eucalyptus grandis]
9 Hb_002942_100 0.0799644379 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61990, mitochondrial [Jatropha curcas]
10 Hb_000999_050 0.0818329876 - - PREDICTED: eukaryotic translation initiation factor isoform 4G-1 isoform X1 [Jatropha curcas]
11 Hb_012490_080 0.0821703545 - - threonine synthase, putative [Ricinus communis]
12 Hb_004607_050 0.0827274477 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
13 Hb_022115_020 0.0842465476 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11 isoform X2 [Jatropha curcas]
14 Hb_005731_130 0.0844824958 - - PREDICTED: probable metal-nicotianamine transporter YSL6 [Jatropha curcas]
15 Hb_089032_040 0.0859415184 - - PREDICTED: pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Jatropha curcas]
16 Hb_001617_050 0.0866552118 - - PREDICTED: uncharacterized protein LOC105649351 isoform X1 [Jatropha curcas]
17 Hb_010128_080 0.0866694142 - - PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like isoform X1 [Jatropha curcas]
18 Hb_010874_020 0.0884036146 - - PREDICTED: uncharacterized protein LOC105636745 [Jatropha curcas]
19 Hb_000297_010 0.0893131521 - - PREDICTED: uncharacterized protein LOC105637916 isoform X2 [Jatropha curcas]
20 Hb_000061_460 0.0900847799 transcription factor TF Family: SNF2 ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_006938_080 Hb_006938_080 Hb_000245_040 Hb_000245_040 Hb_006938_080--Hb_000245_040 Hb_002809_050 Hb_002809_050 Hb_006938_080--Hb_002809_050 Hb_000646_050 Hb_000646_050 Hb_006938_080--Hb_000646_050 Hb_000866_170 Hb_000866_170 Hb_006938_080--Hb_000866_170 Hb_000107_490 Hb_000107_490 Hb_006938_080--Hb_000107_490 Hb_000395_190 Hb_000395_190 Hb_006938_080--Hb_000395_190 Hb_000245_040--Hb_000107_490 Hb_000297_010 Hb_000297_010 Hb_000245_040--Hb_000297_010 Hb_000245_040--Hb_000866_170 Hb_004724_150 Hb_004724_150 Hb_000245_040--Hb_004724_150 Hb_000890_210 Hb_000890_210 Hb_000245_040--Hb_000890_210 Hb_022115_020 Hb_022115_020 Hb_002809_050--Hb_022115_020 Hb_000260_010 Hb_000260_010 Hb_002809_050--Hb_000260_010 Hb_000213_010 Hb_000213_010 Hb_002809_050--Hb_000213_010 Hb_006634_070 Hb_006634_070 Hb_002809_050--Hb_006634_070 Hb_003177_030 Hb_003177_030 Hb_002809_050--Hb_003177_030 Hb_001617_050 Hb_001617_050 Hb_000646_050--Hb_001617_050 Hb_005348_140 Hb_005348_140 Hb_000646_050--Hb_005348_140 Hb_000003_250 Hb_000003_250 Hb_000646_050--Hb_000003_250 Hb_065525_040 Hb_065525_040 Hb_000646_050--Hb_065525_040 Hb_027380_130 Hb_027380_130 Hb_000646_050--Hb_027380_130 Hb_000866_170--Hb_000297_010 Hb_000866_170--Hb_000395_190 Hb_000866_170--Hb_000890_210 Hb_000866_170--Hb_004724_150 Hb_001341_170 Hb_001341_170 Hb_000866_170--Hb_001341_170 Hb_000107_490--Hb_000890_210 Hb_000111_290 Hb_000111_290 Hb_000107_490--Hb_000111_290 Hb_010174_110 Hb_010174_110 Hb_000107_490--Hb_010174_110 Hb_003370_030 Hb_003370_030 Hb_000107_490--Hb_003370_030 Hb_000107_490--Hb_004724_150 Hb_010128_080 Hb_010128_080 Hb_000395_190--Hb_010128_080 Hb_000260_270 Hb_000260_270 Hb_000395_190--Hb_000260_270 Hb_005731_130 Hb_005731_130 Hb_000395_190--Hb_005731_130 Hb_089032_040 Hb_089032_040 Hb_000395_190--Hb_089032_040 Hb_002078_130 Hb_002078_130 Hb_000395_190--Hb_002078_130 Hb_000099_080 Hb_000099_080 Hb_000395_190--Hb_000099_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.1926 27.8108 11.3251 26.248 25.5494 20.8012
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.1577 18.7942 44.4331 29.2603 17.7429

CAGE analysis