Hb_005731_130

Information

Type -
Description -
Location Contig5731: 166243-178322
Sequence    

Annotation

kegg
ID tcc:TCM_017257
description YELLOW STRIPE like 6
nr
ID XP_012067276.1
description PREDICTED: probable metal-nicotianamine transporter YSL6 [Jatropha curcas]
swissprot
ID Q6R3K6
description Probable metal-nicotianamine transporter YSL6 OS=Arabidopsis thaliana GN=YSL6 PE=2 SV=2
trembl
ID A0A067L026
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26809 PE=4 SV=1
Gene Ontology
ID GO:0055085
description probable metal-nicotianamine transporter ysl6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005731_130 0.0 - - PREDICTED: probable metal-nicotianamine transporter YSL6 [Jatropha curcas]
2 Hb_000395_190 0.0579370404 - - PREDICTED: F-box/LRR-repeat protein 7-like [Jatropha curcas]
3 Hb_000260_270 0.0648370247 - - zinc finger protein, putative [Ricinus communis]
4 Hb_010128_080 0.0673695708 - - PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like isoform X1 [Jatropha curcas]
5 Hb_000061_460 0.067992677 transcription factor TF Family: SNF2 ATP binding protein, putative [Ricinus communis]
6 Hb_089032_040 0.0753770243 - - PREDICTED: pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Jatropha curcas]
7 Hb_001143_160 0.0769833211 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 26 isoform X2 [Jatropha curcas]
8 Hb_000185_030 0.0784278972 - - PREDICTED: arginine-glutamic acid dipeptide repeats protein-like isoform X2 [Jatropha curcas]
9 Hb_001341_170 0.0794925098 - - PREDICTED: general transcription factor IIH subunit 2 [Jatropha curcas]
10 Hb_005065_010 0.0807299679 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI11 [Jatropha curcas]
11 Hb_000123_210 0.0817083327 - - PREDICTED: uncharacterized protein LOC105641576 isoform X2 [Jatropha curcas]
12 Hb_004994_220 0.0821862933 - - PREDICTED: K(+) efflux antiporter 2, chloroplastic-like isoform X2 [Jatropha curcas]
13 Hb_000676_110 0.083344284 - - glycosyl transferase family 1 family protein [Populus trichocarpa]
14 Hb_011218_040 0.0836880612 - - methylenetetrahydrofolate dehydrogenase, putative [Ricinus communis]
15 Hb_003058_190 0.0843766569 - - PREDICTED: uncharacterized protein LOC105628951 isoform X1 [Jatropha curcas]
16 Hb_006938_080 0.0844824958 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
17 Hb_000890_210 0.0845514959 - - PREDICTED: serine/threonine-protein kinase PBS1 isoform X1 [Eucalyptus grandis]
18 Hb_000225_040 0.0846309848 - - PREDICTED: translation factor GUF1 homolog, mitochondrial [Nelumbo nucifera]
19 Hb_028285_010 0.0847265437 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Jatropha curcas]
20 Hb_000556_160 0.085232711 - - PREDICTED: ankyrin repeat and zinc finger domain-containing protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_005731_130 Hb_005731_130 Hb_000395_190 Hb_000395_190 Hb_005731_130--Hb_000395_190 Hb_000260_270 Hb_000260_270 Hb_005731_130--Hb_000260_270 Hb_010128_080 Hb_010128_080 Hb_005731_130--Hb_010128_080 Hb_000061_460 Hb_000061_460 Hb_005731_130--Hb_000061_460 Hb_089032_040 Hb_089032_040 Hb_005731_130--Hb_089032_040 Hb_001143_160 Hb_001143_160 Hb_005731_130--Hb_001143_160 Hb_000395_190--Hb_010128_080 Hb_000395_190--Hb_000260_270 Hb_000395_190--Hb_089032_040 Hb_002078_130 Hb_002078_130 Hb_000395_190--Hb_002078_130 Hb_000099_080 Hb_000099_080 Hb_000395_190--Hb_000099_080 Hb_011218_040 Hb_011218_040 Hb_000260_270--Hb_011218_040 Hb_004994_220 Hb_004994_220 Hb_000260_270--Hb_004994_220 Hb_000329_470 Hb_000329_470 Hb_000260_270--Hb_000329_470 Hb_002631_060 Hb_002631_060 Hb_000260_270--Hb_002631_060 Hb_015934_040 Hb_015934_040 Hb_010128_080--Hb_015934_040 Hb_010128_080--Hb_000099_080 Hb_000866_220 Hb_000866_220 Hb_010128_080--Hb_000866_220 Hb_000003_250 Hb_000003_250 Hb_010128_080--Hb_000003_250 Hb_010128_080--Hb_089032_040 Hb_000280_080 Hb_000280_080 Hb_000061_460--Hb_000280_080 Hb_003058_190 Hb_003058_190 Hb_000061_460--Hb_003058_190 Hb_000061_460--Hb_000260_270 Hb_000061_460--Hb_089032_040 Hb_000061_460--Hb_004994_220 Hb_002217_300 Hb_002217_300 Hb_089032_040--Hb_002217_300 Hb_000676_110 Hb_000676_110 Hb_089032_040--Hb_000676_110 Hb_123352_020 Hb_123352_020 Hb_001143_160--Hb_123352_020 Hb_000123_210 Hb_000123_210 Hb_001143_160--Hb_000123_210 Hb_007163_090 Hb_007163_090 Hb_001143_160--Hb_007163_090 Hb_000225_040 Hb_000225_040 Hb_001143_160--Hb_000225_040 Hb_001493_030 Hb_001493_030 Hb_001143_160--Hb_001493_030 Hb_000011_200 Hb_000011_200 Hb_001143_160--Hb_000011_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
61.0895 71.6541 29.8558 57.291 76.5192 65.0933
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
59.2042 66.4395 85.4681 77.6276 28.8283

CAGE analysis