Hb_000280_080

Information

Type -
Description -
Location Contig280: 147516-148210
Sequence    

Annotation

kegg
ID cic:CICLE_v10011515mg
description hypothetical protein
nr
ID KDP32452.1
description hypothetical protein JCGZ_13377 [Jatropha curcas]
swissprot
ID Q55BF2
description 60S ribosomal export protein NMD3 OS=Dictyostelium discoideum GN=nmd3 PE=3 SV=1
trembl
ID A0A067K8L5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13377 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000280_080 0.0 - - hypothetical protein JCGZ_13377 [Jatropha curcas]
2 Hb_000061_460 0.0582431073 transcription factor TF Family: SNF2 ATP binding protein, putative [Ricinus communis]
3 Hb_003976_030 0.0794183535 - - PREDICTED: probable phenylalanine--tRNA ligase beta subunit [Jatropha curcas]
4 Hb_001892_020 0.0800150502 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
5 Hb_000009_320 0.0904528949 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66631 [Jatropha curcas]
6 Hb_000049_310 0.0908123305 - - Myosin-J heavy chain, partial [Glycine soja]
7 Hb_004907_110 0.0933420165 - - PREDICTED: BTB/POZ and MATH domain-containing protein 3 isoform X1 [Jatropha curcas]
8 Hb_000907_080 0.0935047027 - - PREDICTED: uncharacterized protein LOC105640819 [Jatropha curcas]
9 Hb_003058_190 0.094178666 - - PREDICTED: uncharacterized protein LOC105628951 isoform X1 [Jatropha curcas]
10 Hb_002830_030 0.0981231507 - - PREDICTED: CDK5RAP3-like protein [Jatropha curcas]
11 Hb_000291_110 0.0985701928 - - eukaryotic translation initiation factor [Hevea brasiliensis]
12 Hb_089032_040 0.0986963822 - - PREDICTED: pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Jatropha curcas]
13 Hb_000898_040 0.0991686329 - - ankyrin repeat-containing protein, putative [Ricinus communis]
14 Hb_019654_190 0.099678068 - - protein kinase, putative [Ricinus communis]
15 Hb_166646_010 0.100920615 - - hypothetical protein POPTR_0010s22200g [Populus trichocarpa]
16 Hb_001635_060 0.101084896 - - eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
17 Hb_000207_250 0.1015939775 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein, putative [Ricinus communis]
18 Hb_000445_420 0.1020807373 - - protein transporter, putative [Ricinus communis]
19 Hb_006938_080 0.1025206798 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
20 Hb_002016_110 0.1033004238 - - transducin family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_000280_080 Hb_000280_080 Hb_000061_460 Hb_000061_460 Hb_000280_080--Hb_000061_460 Hb_003976_030 Hb_003976_030 Hb_000280_080--Hb_003976_030 Hb_001892_020 Hb_001892_020 Hb_000280_080--Hb_001892_020 Hb_000009_320 Hb_000009_320 Hb_000280_080--Hb_000009_320 Hb_000049_310 Hb_000049_310 Hb_000280_080--Hb_000049_310 Hb_004907_110 Hb_004907_110 Hb_000280_080--Hb_004907_110 Hb_003058_190 Hb_003058_190 Hb_000061_460--Hb_003058_190 Hb_005731_130 Hb_005731_130 Hb_000061_460--Hb_005731_130 Hb_000260_270 Hb_000260_270 Hb_000061_460--Hb_000260_270 Hb_089032_040 Hb_089032_040 Hb_000061_460--Hb_089032_040 Hb_004994_220 Hb_004994_220 Hb_000061_460--Hb_004994_220 Hb_000092_010 Hb_000092_010 Hb_003976_030--Hb_000092_010 Hb_012325_020 Hb_012325_020 Hb_003976_030--Hb_012325_020 Hb_000011_330 Hb_000011_330 Hb_003976_030--Hb_000011_330 Hb_005348_140 Hb_005348_140 Hb_003976_030--Hb_005348_140 Hb_003976_030--Hb_001892_020 Hb_001892_020--Hb_004907_110 Hb_007532_030 Hb_007532_030 Hb_001892_020--Hb_007532_030 Hb_002631_060 Hb_002631_060 Hb_001892_020--Hb_002631_060 Hb_001178_140 Hb_001178_140 Hb_001892_020--Hb_001178_140 Hb_010883_090 Hb_010883_090 Hb_001892_020--Hb_010883_090 Hb_000009_320--Hb_000049_310 Hb_003464_060 Hb_003464_060 Hb_000009_320--Hb_003464_060 Hb_002903_060 Hb_002903_060 Hb_000009_320--Hb_002903_060 Hb_000009_320--Hb_004907_110 Hb_000009_320--Hb_003058_190 Hb_001956_200 Hb_001956_200 Hb_000049_310--Hb_001956_200 Hb_000049_310--Hb_004907_110 Hb_000049_310--Hb_000061_460 Hb_000049_310--Hb_012325_020 Hb_000805_020 Hb_000805_020 Hb_004907_110--Hb_000805_020 Hb_004907_110--Hb_007532_030 Hb_008725_260 Hb_008725_260 Hb_004907_110--Hb_008725_260 Hb_031527_040 Hb_031527_040 Hb_004907_110--Hb_031527_040 Hb_000876_070 Hb_000876_070 Hb_004907_110--Hb_000876_070 Hb_004907_110--Hb_002631_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.10336 1.20018 0.653622 0.942513 1.46255 1.45665
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.78512 0.901609 2.56176 1.20433 0.565687

CAGE analysis