Hb_007532_030

Information

Type -
Description -
Location Contig7532: 35483-36700
Sequence    

Annotation

kegg
ID vvi:100265306
description F-box/kelch-repeat protein At1g30090-like
nr
ID XP_012072116.1
description PREDICTED: F-box/kelch-repeat protein At1g30090 [Jatropha curcas]
swissprot
ID Q9C6Z0
description F-box/kelch-repeat protein At1g30090 OS=Arabidopsis thaliana GN=At1g30090 PE=2 SV=1
trembl
ID A0A067L1K0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04627 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56935: 35302-37520
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007532_030 0.0 - - PREDICTED: F-box/kelch-repeat protein At1g30090 [Jatropha curcas]
2 Hb_009178_030 0.0610552795 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002218_010 0.0613612703 transcription factor TF Family: Orphans ethylene receptor, putative [Ricinus communis]
4 Hb_004907_110 0.0621706204 - - PREDICTED: BTB/POZ and MATH domain-containing protein 3 isoform X1 [Jatropha curcas]
5 Hb_008725_260 0.0659122394 - - PREDICTED: uncharacterized protein LOC105642597 [Jatropha curcas]
6 Hb_007508_090 0.0675157804 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
7 Hb_000189_560 0.0682823618 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1 [Jatropha curcas]
8 Hb_000866_220 0.0692298665 - - PREDICTED: uncharacterized protein LOC105642989 [Jatropha curcas]
9 Hb_003371_090 0.0726215967 - - PREDICTED: uncharacterized protein LOC105650336 [Jatropha curcas]
10 Hb_000181_070 0.0751167247 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_010128_080 0.0766961621 - - PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like isoform X1 [Jatropha curcas]
12 Hb_000230_390 0.0767491368 - - PREDICTED: F-box/kelch-repeat protein At3g23880 [Jatropha curcas]
13 Hb_000512_060 0.0769214512 - - PREDICTED: F-box/WD-40 repeat-containing protein At5g21040 [Jatropha curcas]
14 Hb_000213_100 0.0795892936 - - PREDICTED: pentatricopeptide repeat-containing protein At1g79540-like [Jatropha curcas]
15 Hb_001892_020 0.0830002343 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
16 Hb_003376_350 0.083450548 - - PREDICTED: CASP-like protein 5A1 isoform X1 [Jatropha curcas]
17 Hb_000395_190 0.0838230762 - - PREDICTED: F-box/LRR-repeat protein 7-like [Jatropha curcas]
18 Hb_007416_180 0.0843216589 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
19 Hb_002631_060 0.0867388807 - - PREDICTED: uncharacterized protein LOC105646151 [Jatropha curcas]
20 Hb_001014_030 0.0870439075 - - ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_007532_030 Hb_007532_030 Hb_009178_030 Hb_009178_030 Hb_007532_030--Hb_009178_030 Hb_002218_010 Hb_002218_010 Hb_007532_030--Hb_002218_010 Hb_004907_110 Hb_004907_110 Hb_007532_030--Hb_004907_110 Hb_008725_260 Hb_008725_260 Hb_007532_030--Hb_008725_260 Hb_007508_090 Hb_007508_090 Hb_007532_030--Hb_007508_090 Hb_000189_560 Hb_000189_560 Hb_007532_030--Hb_000189_560 Hb_009178_030--Hb_008725_260 Hb_085863_030 Hb_085863_030 Hb_009178_030--Hb_085863_030 Hb_000866_220 Hb_000866_220 Hb_009178_030--Hb_000866_220 Hb_000003_250 Hb_000003_250 Hb_009178_030--Hb_000003_250 Hb_001014_030 Hb_001014_030 Hb_009178_030--Hb_001014_030 Hb_000213_100 Hb_000213_100 Hb_002218_010--Hb_000213_100 Hb_005348_140 Hb_005348_140 Hb_002218_010--Hb_005348_140 Hb_002218_010--Hb_009178_030 Hb_000343_130 Hb_000343_130 Hb_002218_010--Hb_000343_130 Hb_004052_090 Hb_004052_090 Hb_002218_010--Hb_004052_090 Hb_000805_020 Hb_000805_020 Hb_004907_110--Hb_000805_020 Hb_004907_110--Hb_008725_260 Hb_031527_040 Hb_031527_040 Hb_004907_110--Hb_031527_040 Hb_000876_070 Hb_000876_070 Hb_004907_110--Hb_000876_070 Hb_002631_060 Hb_002631_060 Hb_004907_110--Hb_002631_060 Hb_002110_150 Hb_002110_150 Hb_008725_260--Hb_002110_150 Hb_002046_180 Hb_002046_180 Hb_008725_260--Hb_002046_180 Hb_008725_260--Hb_000866_220 Hb_008725_260--Hb_000876_070 Hb_000230_390 Hb_000230_390 Hb_007508_090--Hb_000230_390 Hb_003371_090 Hb_003371_090 Hb_007508_090--Hb_003371_090 Hb_000710_060 Hb_000710_060 Hb_007508_090--Hb_000710_060 Hb_007508_090--Hb_000189_560 Hb_007508_090--Hb_000213_100 Hb_000189_560--Hb_000866_220 Hb_000185_030 Hb_000185_030 Hb_000189_560--Hb_000185_030 Hb_000189_560--Hb_000710_060 Hb_004355_020 Hb_004355_020 Hb_000189_560--Hb_004355_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.7135 42.4157 13.432 26.4168 23.0997 38.1797
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
39.4167 41.6969 57.3732 23.7674 19.0912

CAGE analysis