Hb_000189_560

Information

Type transcription factor
Description TF Family: GeBP
Location Contig189: 441677-442885
Sequence    

Annotation

kegg
ID rcu:RCOM_1428550
description transcription regulator, putative
nr
ID XP_012089211.1
description PREDICTED: mediator-associated protein 1 [Jatropha curcas]
swissprot
ID Q9SB42
description Mediator-associated protein 1 OS=Arabidopsis thaliana GN=At4g25210 PE=1 SV=1
trembl
ID A0A067JI48
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23459 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000189_560 0.0 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1 [Jatropha curcas]
2 Hb_000866_220 0.0647338995 - - PREDICTED: uncharacterized protein LOC105642989 [Jatropha curcas]
3 Hb_007532_030 0.0682823618 - - PREDICTED: F-box/kelch-repeat protein At1g30090 [Jatropha curcas]
4 Hb_000185_030 0.0683291952 - - PREDICTED: arginine-glutamic acid dipeptide repeats protein-like isoform X2 [Jatropha curcas]
5 Hb_007508_090 0.0716829152 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
6 Hb_000710_060 0.0733840811 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105645554 isoform X2 [Jatropha curcas]
7 Hb_004355_020 0.0749461914 - - PREDICTED: lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial [Jatropha curcas]
8 Hb_000538_270 0.0753128625 - - PREDICTED: serine/threonine-protein kinase HT1-like [Citrus sinensis]
9 Hb_001157_040 0.0764362742 - - casein kinase, putative [Ricinus communis]
10 Hb_004907_110 0.0772364872 - - PREDICTED: BTB/POZ and MATH domain-containing protein 3 isoform X1 [Jatropha curcas]
11 Hb_003761_010 0.0773458913 - - alcohol dehydrogenase, putative [Ricinus communis]
12 Hb_001226_040 0.078078141 - - protein with unknown function [Ricinus communis]
13 Hb_000331_670 0.0791870695 - - PREDICTED: protein tipD [Jatropha curcas]
14 Hb_002391_310 0.0809453926 - - hypothetical protein PRUPE_ppa021315mg [Prunus persica]
15 Hb_009767_100 0.081012175 - - PREDICTED: FRIGIDA-like protein 4a [Jatropha curcas]
16 Hb_001005_190 0.0814711901 - - PREDICTED: UPF0496 protein At3g19330-like isoform X1 [Jatropha curcas]
17 Hb_003376_350 0.083294107 - - PREDICTED: CASP-like protein 5A1 isoform X1 [Jatropha curcas]
18 Hb_001838_060 0.0833214116 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1b(c38)-like isoform X3 [Jatropha curcas]
19 Hb_003371_090 0.0835392031 - - PREDICTED: uncharacterized protein LOC105650336 [Jatropha curcas]
20 Hb_000859_060 0.0839993503 - - PREDICTED: uncharacterized protein LOC105641312 [Jatropha curcas]

Gene co-expression network

sample Hb_000189_560 Hb_000189_560 Hb_000866_220 Hb_000866_220 Hb_000189_560--Hb_000866_220 Hb_007532_030 Hb_007532_030 Hb_000189_560--Hb_007532_030 Hb_000185_030 Hb_000185_030 Hb_000189_560--Hb_000185_030 Hb_007508_090 Hb_007508_090 Hb_000189_560--Hb_007508_090 Hb_000710_060 Hb_000710_060 Hb_000189_560--Hb_000710_060 Hb_004355_020 Hb_004355_020 Hb_000189_560--Hb_004355_020 Hb_001157_040 Hb_001157_040 Hb_000866_220--Hb_001157_040 Hb_000056_240 Hb_000056_240 Hb_000866_220--Hb_000056_240 Hb_008725_260 Hb_008725_260 Hb_000866_220--Hb_008725_260 Hb_010128_080 Hb_010128_080 Hb_000866_220--Hb_010128_080 Hb_002046_180 Hb_002046_180 Hb_000866_220--Hb_002046_180 Hb_009178_030 Hb_009178_030 Hb_007532_030--Hb_009178_030 Hb_002218_010 Hb_002218_010 Hb_007532_030--Hb_002218_010 Hb_004907_110 Hb_004907_110 Hb_007532_030--Hb_004907_110 Hb_007532_030--Hb_008725_260 Hb_007532_030--Hb_007508_090 Hb_000297_010 Hb_000297_010 Hb_000185_030--Hb_000297_010 Hb_000185_030--Hb_000710_060 Hb_003761_010 Hb_003761_010 Hb_000185_030--Hb_003761_010 Hb_001633_210 Hb_001633_210 Hb_000185_030--Hb_001633_210 Hb_008725_230 Hb_008725_230 Hb_000185_030--Hb_008725_230 Hb_000840_250 Hb_000840_250 Hb_000185_030--Hb_000840_250 Hb_000230_390 Hb_000230_390 Hb_007508_090--Hb_000230_390 Hb_003371_090 Hb_003371_090 Hb_007508_090--Hb_003371_090 Hb_007508_090--Hb_000710_060 Hb_000213_100 Hb_000213_100 Hb_007508_090--Hb_000213_100 Hb_000049_210 Hb_000049_210 Hb_000710_060--Hb_000049_210 Hb_008770_030 Hb_008770_030 Hb_000710_060--Hb_008770_030 Hb_000710_060--Hb_001633_210 Hb_000710_060--Hb_000297_010 Hb_001205_240 Hb_001205_240 Hb_000710_060--Hb_001205_240 Hb_007254_070 Hb_007254_070 Hb_004355_020--Hb_007254_070 Hb_011671_430 Hb_011671_430 Hb_004355_020--Hb_011671_430 Hb_001021_170 Hb_001021_170 Hb_004355_020--Hb_001021_170 Hb_000629_010 Hb_000629_010 Hb_004355_020--Hb_000629_010 Hb_011218_040 Hb_011218_040 Hb_004355_020--Hb_011218_040 Hb_006788_020 Hb_006788_020 Hb_004355_020--Hb_006788_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
42.003 56.8182 21.41 26.5484 27.4151 38.7881
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
48.3722 53.6756 53.2114 37.7529 22.1344

CAGE analysis