Hb_010128_080

Information

Type -
Description -
Location Contig10128: 56754-58925
Sequence    

Annotation

kegg
ID rcu:RCOM_1436630
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012088830.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like isoform X1 [Jatropha curcas]
swissprot
ID Q9FMF6
description Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2 SV=1
trembl
ID A0A067JKK4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23171 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00641: 57382-57536 , PASA_asmbl_00642: 57743-57951 , PASA_asmbl_00643: 58349-58466
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010128_080 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like isoform X1 [Jatropha curcas]
2 Hb_000395_190 0.0401022601 - - PREDICTED: F-box/LRR-repeat protein 7-like [Jatropha curcas]
3 Hb_015934_040 0.0554915022 - - PREDICTED: protein Hook homolog 3-like [Jatropha curcas]
4 Hb_000099_080 0.0603646337 - - kinesin light chain, putative [Ricinus communis]
5 Hb_000866_220 0.0608621324 - - PREDICTED: uncharacterized protein LOC105642989 [Jatropha curcas]
6 Hb_000003_250 0.0641051664 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]
7 Hb_089032_040 0.0657960821 - - PREDICTED: pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Jatropha curcas]
8 Hb_000297_010 0.0671874063 - - PREDICTED: uncharacterized protein LOC105637916 isoform X2 [Jatropha curcas]
9 Hb_005731_130 0.0673695708 - - PREDICTED: probable metal-nicotianamine transporter YSL6 [Jatropha curcas]
10 Hb_000185_030 0.0682109265 - - PREDICTED: arginine-glutamic acid dipeptide repeats protein-like isoform X2 [Jatropha curcas]
11 Hb_022115_020 0.0700471987 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11 isoform X2 [Jatropha curcas]
12 Hb_001617_050 0.0703112081 - - PREDICTED: uncharacterized protein LOC105649351 isoform X1 [Jatropha curcas]
13 Hb_000876_070 0.0708547612 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
14 Hb_031527_040 0.0715649011 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1 [Jatropha curcas]
15 Hb_008725_260 0.0722903191 - - PREDICTED: uncharacterized protein LOC105642597 [Jatropha curcas]
16 Hb_007416_180 0.0723589763 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
17 Hb_001538_130 0.0727431741 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001248_060 0.073090286 - - conserved hypothetical protein [Ricinus communis]
19 Hb_010618_010 0.0735853862 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
20 Hb_000107_330 0.0743723948 - - PREDICTED: pentatricopeptide repeat-containing protein At4g38150 [Jatropha curcas]

Gene co-expression network

sample Hb_010128_080 Hb_010128_080 Hb_000395_190 Hb_000395_190 Hb_010128_080--Hb_000395_190 Hb_015934_040 Hb_015934_040 Hb_010128_080--Hb_015934_040 Hb_000099_080 Hb_000099_080 Hb_010128_080--Hb_000099_080 Hb_000866_220 Hb_000866_220 Hb_010128_080--Hb_000866_220 Hb_000003_250 Hb_000003_250 Hb_010128_080--Hb_000003_250 Hb_089032_040 Hb_089032_040 Hb_010128_080--Hb_089032_040 Hb_000260_270 Hb_000260_270 Hb_000395_190--Hb_000260_270 Hb_005731_130 Hb_005731_130 Hb_000395_190--Hb_005731_130 Hb_000395_190--Hb_089032_040 Hb_002078_130 Hb_002078_130 Hb_000395_190--Hb_002078_130 Hb_000395_190--Hb_000099_080 Hb_010618_010 Hb_010618_010 Hb_015934_040--Hb_010618_010 Hb_000297_010 Hb_000297_010 Hb_015934_040--Hb_000297_010 Hb_000331_670 Hb_000331_670 Hb_015934_040--Hb_000331_670 Hb_000032_520 Hb_000032_520 Hb_015934_040--Hb_000032_520 Hb_001248_060 Hb_001248_060 Hb_015934_040--Hb_001248_060 Hb_007691_030 Hb_007691_030 Hb_000099_080--Hb_007691_030 Hb_010712_030 Hb_010712_030 Hb_000099_080--Hb_010712_030 Hb_031527_040 Hb_031527_040 Hb_000099_080--Hb_031527_040 Hb_000563_320 Hb_000563_320 Hb_000099_080--Hb_000563_320 Hb_001157_040 Hb_001157_040 Hb_000866_220--Hb_001157_040 Hb_000056_240 Hb_000056_240 Hb_000866_220--Hb_000056_240 Hb_008725_260 Hb_008725_260 Hb_000866_220--Hb_008725_260 Hb_002046_180 Hb_002046_180 Hb_000866_220--Hb_002046_180 Hb_000189_560 Hb_000189_560 Hb_000866_220--Hb_000189_560 Hb_001014_030 Hb_001014_030 Hb_000003_250--Hb_001014_030 Hb_005463_100 Hb_005463_100 Hb_000003_250--Hb_005463_100 Hb_000003_250--Hb_002046_180 Hb_000876_070 Hb_000876_070 Hb_000003_250--Hb_000876_070 Hb_001799_210 Hb_001799_210 Hb_000003_250--Hb_001799_210 Hb_002217_300 Hb_002217_300 Hb_089032_040--Hb_002217_300 Hb_000061_460 Hb_000061_460 Hb_089032_040--Hb_000061_460 Hb_089032_040--Hb_005731_130 Hb_000676_110 Hb_000676_110 Hb_089032_040--Hb_000676_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.92689 4.19991 2.04194 3.96524 4.05887 4.27748
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.81152 5.00932 6.16142 3.54463 2.47248

CAGE analysis