Hb_000297_010

Information

Type -
Description -
Location Contig297: 10636-25966
Sequence    

Annotation

kegg
ID rcu:RCOM_1046470
description hypothetical protein
nr
ID XP_012076979.1
description PREDICTED: uncharacterized protein LOC105637916 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KPX4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07440 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31079: 10934-13337 , PASA_asmbl_31080: 13374-13632 , PASA_asmbl_31081: 13748-15009 , PASA_asmbl_31082: 15012-17478 , PASA_asmbl_31083: 17525-25960
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000297_010 0.0 - - PREDICTED: uncharacterized protein LOC105637916 isoform X2 [Jatropha curcas]
2 Hb_000185_030 0.04890404 - - PREDICTED: arginine-glutamic acid dipeptide repeats protein-like isoform X2 [Jatropha curcas]
3 Hb_004724_150 0.0489326627 - - expressed protein, putative [Ricinus communis]
4 Hb_015934_040 0.0528968179 - - PREDICTED: protein Hook homolog 3-like [Jatropha curcas]
5 Hb_000245_040 0.0547888525 - - PREDICTED: uncharacterized protein LOC105631550 isoform X2 [Jatropha curcas]
6 Hb_000041_100 0.0574255841 - - PREDICTED: zinc finger CCCH domain-containing protein 41 [Jatropha curcas]
7 Hb_000840_250 0.0579116983 - - PREDICTED: autophagy-related protein 13 [Jatropha curcas]
8 Hb_001633_210 0.0601370288 - - PREDICTED: RING finger protein 10 isoform X2 [Jatropha curcas]
9 Hb_000041_110 0.060843096 - - PREDICTED: WW domain-binding protein 11 isoform X1 [Jatropha curcas]
10 Hb_002450_020 0.0632087392 - - PREDICTED: probable transcriptional regulator SLK2 [Jatropha curcas]
11 Hb_000710_060 0.0634444722 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105645554 isoform X2 [Jatropha curcas]
12 Hb_000250_060 0.0643704407 - - PREDICTED: 28S ribosomal protein S29, mitochondrial [Jatropha curcas]
13 Hb_001014_030 0.0665252448 - - ATP binding protein, putative [Ricinus communis]
14 Hb_008770_030 0.0669337129 - - PREDICTED: MACPF domain-containing protein At4g24290-like [Jatropha curcas]
15 Hb_010128_080 0.0671874063 - - PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like isoform X1 [Jatropha curcas]
16 Hb_000866_170 0.0695572098 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_000049_210 0.0698787672 - - PREDICTED: uncharacterized protein LOC105644460 [Jatropha curcas]
18 Hb_003371_090 0.0706838577 - - PREDICTED: uncharacterized protein LOC105650336 [Jatropha curcas]
19 Hb_022115_020 0.0718196009 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11 isoform X2 [Jatropha curcas]
20 Hb_019863_070 0.0726748535 - - PREDICTED: regulatory-associated protein of TOR 1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000297_010 Hb_000297_010 Hb_000185_030 Hb_000185_030 Hb_000297_010--Hb_000185_030 Hb_004724_150 Hb_004724_150 Hb_000297_010--Hb_004724_150 Hb_015934_040 Hb_015934_040 Hb_000297_010--Hb_015934_040 Hb_000245_040 Hb_000245_040 Hb_000297_010--Hb_000245_040 Hb_000041_100 Hb_000041_100 Hb_000297_010--Hb_000041_100 Hb_000840_250 Hb_000840_250 Hb_000297_010--Hb_000840_250 Hb_000710_060 Hb_000710_060 Hb_000185_030--Hb_000710_060 Hb_003761_010 Hb_003761_010 Hb_000185_030--Hb_003761_010 Hb_001633_210 Hb_001633_210 Hb_000185_030--Hb_001633_210 Hb_008725_230 Hb_008725_230 Hb_000185_030--Hb_008725_230 Hb_000185_030--Hb_000840_250 Hb_001341_170 Hb_001341_170 Hb_004724_150--Hb_001341_170 Hb_004724_150--Hb_000245_040 Hb_000028_180 Hb_000028_180 Hb_004724_150--Hb_000028_180 Hb_000556_160 Hb_000556_160 Hb_004724_150--Hb_000556_160 Hb_000107_490 Hb_000107_490 Hb_004724_150--Hb_000107_490 Hb_010618_010 Hb_010618_010 Hb_015934_040--Hb_010618_010 Hb_000331_670 Hb_000331_670 Hb_015934_040--Hb_000331_670 Hb_010128_080 Hb_010128_080 Hb_015934_040--Hb_010128_080 Hb_000032_520 Hb_000032_520 Hb_015934_040--Hb_000032_520 Hb_001248_060 Hb_001248_060 Hb_015934_040--Hb_001248_060 Hb_000245_040--Hb_000107_490 Hb_000866_170 Hb_000866_170 Hb_000245_040--Hb_000866_170 Hb_006938_080 Hb_006938_080 Hb_000245_040--Hb_006938_080 Hb_000890_210 Hb_000890_210 Hb_000245_040--Hb_000890_210 Hb_003371_090 Hb_003371_090 Hb_000041_100--Hb_003371_090 Hb_002450_020 Hb_002450_020 Hb_000041_100--Hb_002450_020 Hb_007441_220 Hb_007441_220 Hb_000041_100--Hb_007441_220 Hb_000230_500 Hb_000230_500 Hb_000041_100--Hb_000230_500 Hb_011386_010 Hb_011386_010 Hb_000041_100--Hb_011386_010 Hb_000840_250--Hb_001633_210 Hb_000614_250 Hb_000614_250 Hb_000840_250--Hb_000614_250 Hb_001014_030 Hb_001014_030 Hb_000840_250--Hb_001014_030 Hb_000230_390 Hb_000230_390 Hb_000840_250--Hb_000230_390
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.83189 9.46176 5.15432 7.14311 6.88811 7.94159
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.6072 9.85734 12.7559 9.12507 6.40005

CAGE analysis