Hb_000331_670

Information

Type -
Description -
Location Contig331: 510708-513818
Sequence    

Annotation

kegg
ID rcu:RCOM_1507840
description Protein tipD, putative (EC:2.7.11.7)
nr
ID XP_012079939.1
description PREDICTED: protein tipD [Jatropha curcas]
swissprot
ID O15736
description Protein tipD OS=Dictyostelium discoideum GN=tipD PE=3 SV=1
trembl
ID A0A067KGM4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11375 PE=4 SV=1
Gene Ontology
ID GO:0005515
description protein tipd

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34829: 510725-512924 , PASA_asmbl_34830: 513412-513620
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000331_670 0.0 - - PREDICTED: protein tipD [Jatropha curcas]
2 Hb_015934_040 0.0550818038 - - PREDICTED: protein Hook homolog 3-like [Jatropha curcas]
3 Hb_003211_020 0.059709619 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial [Jatropha curcas]
4 Hb_001157_040 0.0604661192 - - casein kinase, putative [Ricinus communis]
5 Hb_007163_120 0.0624568718 - - PREDICTED: COMPASS-like H3K4 histone methylase component WDR5A [Jatropha curcas]
6 Hb_013399_100 0.0632439708 - - conserved hypothetical protein [Ricinus communis]
7 Hb_021576_110 0.0633218777 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 4 [Jatropha curcas]
8 Hb_001838_060 0.0645705882 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1b(c38)-like isoform X3 [Jatropha curcas]
9 Hb_001818_070 0.0674878378 - - carbon catabolite repressor protein, putative [Ricinus communis]
10 Hb_000866_220 0.0682538902 - - PREDICTED: uncharacterized protein LOC105642989 [Jatropha curcas]
11 Hb_000049_260 0.072311218 - - WD-repeat protein, putative [Ricinus communis]
12 Hb_000868_110 0.0739435603 - - PREDICTED: uncharacterized protein LOC105638026 [Jatropha curcas]
13 Hb_000185_030 0.0741251885 - - PREDICTED: arginine-glutamic acid dipeptide repeats protein-like isoform X2 [Jatropha curcas]
14 Hb_000603_280 0.0742623206 - - PREDICTED: uncharacterized protein LOC105638082 [Jatropha curcas]
15 Hb_012564_030 0.0743181335 - - coronatine-insensitive 1 [Hevea brasiliensis]
16 Hb_007416_180 0.0744329581 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
17 Hb_008725_260 0.074576729 - - PREDICTED: uncharacterized protein LOC105642597 [Jatropha curcas]
18 Hb_004208_030 0.0746343255 transcription factor TF Family: MYB-related PREDICTED: TSL-kinase interacting protein 1 [Jatropha curcas]
19 Hb_002110_150 0.0746345796 - - PREDICTED: serine/threonine-protein kinase PEPKR2 [Jatropha curcas]
20 Hb_000538_270 0.0750061185 - - PREDICTED: serine/threonine-protein kinase HT1-like [Citrus sinensis]

Gene co-expression network

sample Hb_000331_670 Hb_000331_670 Hb_015934_040 Hb_015934_040 Hb_000331_670--Hb_015934_040 Hb_003211_020 Hb_003211_020 Hb_000331_670--Hb_003211_020 Hb_001157_040 Hb_001157_040 Hb_000331_670--Hb_001157_040 Hb_007163_120 Hb_007163_120 Hb_000331_670--Hb_007163_120 Hb_013399_100 Hb_013399_100 Hb_000331_670--Hb_013399_100 Hb_021576_110 Hb_021576_110 Hb_000331_670--Hb_021576_110 Hb_010618_010 Hb_010618_010 Hb_015934_040--Hb_010618_010 Hb_000297_010 Hb_000297_010 Hb_015934_040--Hb_000297_010 Hb_010128_080 Hb_010128_080 Hb_015934_040--Hb_010128_080 Hb_000032_520 Hb_000032_520 Hb_015934_040--Hb_000032_520 Hb_001248_060 Hb_001248_060 Hb_015934_040--Hb_001248_060 Hb_001838_060 Hb_001838_060 Hb_003211_020--Hb_001838_060 Hb_003211_020--Hb_001157_040 Hb_001818_070 Hb_001818_070 Hb_003211_020--Hb_001818_070 Hb_004684_010 Hb_004684_010 Hb_003211_020--Hb_004684_010 Hb_009178_030 Hb_009178_030 Hb_003211_020--Hb_009178_030 Hb_000866_220 Hb_000866_220 Hb_001157_040--Hb_000866_220 Hb_001157_040--Hb_001838_060 Hb_000563_320 Hb_000563_320 Hb_001157_040--Hb_000563_320 Hb_000016_250 Hb_000016_250 Hb_001157_040--Hb_000016_250 Hb_000538_270 Hb_000538_270 Hb_001157_040--Hb_000538_270 Hb_003464_090 Hb_003464_090 Hb_007163_120--Hb_003464_090 Hb_003370_030 Hb_003370_030 Hb_007163_120--Hb_003370_030 Hb_033772_030 Hb_033772_030 Hb_007163_120--Hb_033772_030 Hb_011491_010 Hb_011491_010 Hb_007163_120--Hb_011491_010 Hb_007765_110 Hb_007765_110 Hb_007163_120--Hb_007765_110 Hb_024621_040 Hb_024621_040 Hb_007163_120--Hb_024621_040 Hb_001409_020 Hb_001409_020 Hb_013399_100--Hb_001409_020 Hb_000060_090 Hb_000060_090 Hb_013399_100--Hb_000060_090 Hb_105105_020 Hb_105105_020 Hb_013399_100--Hb_105105_020 Hb_003504_030 Hb_003504_030 Hb_013399_100--Hb_003504_030 Hb_000780_230 Hb_000780_230 Hb_013399_100--Hb_000780_230 Hb_013399_100--Hb_010618_010 Hb_000868_110 Hb_000868_110 Hb_021576_110--Hb_000868_110 Hb_140506_010 Hb_140506_010 Hb_021576_110--Hb_140506_010 Hb_021576_110--Hb_001818_070 Hb_021576_110--Hb_001157_040 Hb_021576_110--Hb_001838_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.7514 22.1743 12.786 14.1328 12.6958 17.2778
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.5456 18.7608 22.0701 12.012 9.71563

CAGE analysis