Hb_033772_030

Information

Type -
Description -
Location Contig33772: 58432-77066
Sequence    

Annotation

kegg
ID cit:102626180
description CST complex subunit CTC1-like
nr
ID XP_012071711.1
description PREDICTED: CST complex subunit CTC1 [Jatropha curcas]
swissprot
ID D0EL35
description CST complex subunit CTC1 OS=Arabidopsis thaliana GN=CTC1 PE=1 SV=2
trembl
ID A0A061FB54
description Telomere maintenance component 1, putative isoform 1 OS=Theobroma cacao GN=TCM_033912 PE=4 SV=1
Gene Ontology
ID GO:0003697
description cst complex subunit ctc1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35371: 60299-60469 , PASA_asmbl_35372: 67529-76303 , PASA_asmbl_35374: 75870-76477
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033772_030 0.0 - - PREDICTED: CST complex subunit CTC1 [Jatropha curcas]
2 Hb_007163_120 0.0518615084 - - PREDICTED: COMPASS-like H3K4 histone methylase component WDR5A [Jatropha curcas]
3 Hb_006922_010 0.0528299933 - - PREDICTED: F-box/kelch-repeat protein At3g23880-like [Jatropha curcas]
4 Hb_002900_090 0.0529519779 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105646817 [Jatropha curcas]
5 Hb_003370_030 0.0601581372 - - PREDICTED: uncharacterized protein LOC105635547 isoform X2 [Jatropha curcas]
6 Hb_007765_110 0.0607793573 - - PREDICTED: zinc finger CCCH domain-containing protein 40-like [Jatropha curcas]
7 Hb_003464_090 0.0618880111 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]
8 Hb_008770_030 0.067437504 - - PREDICTED: MACPF domain-containing protein At4g24290-like [Jatropha curcas]
9 Hb_022256_020 0.0681153394 - - PREDICTED: pentatricopeptide repeat-containing protein At4g35130, chloroplastic [Jatropha curcas]
10 Hb_002818_030 0.0696462329 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
11 Hb_002217_170 0.0701097131 - - PREDICTED: E3 ubiquitin-protein ligase UPL6-like isoform X1 [Gossypium raimondii]
12 Hb_000317_370 0.0710207175 transcription factor TF Family: PHD PREDICTED: PHD finger protein At1g33420-like [Jatropha curcas]
13 Hb_000107_490 0.0721999083 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
14 Hb_000739_100 0.0752390161 - - ku P80 DNA helicase, putative [Ricinus communis]
15 Hb_000868_090 0.0752472798 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 4 [Jatropha curcas]
16 Hb_001838_060 0.0758122083 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1b(c38)-like isoform X3 [Jatropha curcas]
17 Hb_000185_030 0.0760079064 - - PREDICTED: arginine-glutamic acid dipeptide repeats protein-like isoform X2 [Jatropha curcas]
18 Hb_001005_190 0.0763114984 - - PREDICTED: UPF0496 protein At3g19330-like isoform X1 [Jatropha curcas]
19 Hb_024621_040 0.0771907167 transcription factor TF Family: ERF hypothetical protein L484_014666 [Morus notabilis]
20 Hb_011491_010 0.0783454927 - - Protein YME1, putative [Ricinus communis]

Gene co-expression network

sample Hb_033772_030 Hb_033772_030 Hb_007163_120 Hb_007163_120 Hb_033772_030--Hb_007163_120 Hb_006922_010 Hb_006922_010 Hb_033772_030--Hb_006922_010 Hb_002900_090 Hb_002900_090 Hb_033772_030--Hb_002900_090 Hb_003370_030 Hb_003370_030 Hb_033772_030--Hb_003370_030 Hb_007765_110 Hb_007765_110 Hb_033772_030--Hb_007765_110 Hb_003464_090 Hb_003464_090 Hb_033772_030--Hb_003464_090 Hb_007163_120--Hb_003464_090 Hb_007163_120--Hb_003370_030 Hb_011491_010 Hb_011491_010 Hb_007163_120--Hb_011491_010 Hb_007163_120--Hb_007765_110 Hb_024621_040 Hb_024621_040 Hb_007163_120--Hb_024621_040 Hb_005000_260 Hb_005000_260 Hb_006922_010--Hb_005000_260 Hb_006922_010--Hb_002900_090 Hb_006922_010--Hb_003370_030 Hb_006922_010--Hb_007163_120 Hb_000739_100 Hb_000739_100 Hb_006922_010--Hb_000739_100 Hb_002900_090--Hb_005000_260 Hb_002900_090--Hb_000739_100 Hb_002900_090--Hb_003464_090 Hb_002900_090--Hb_007163_120 Hb_001114_140 Hb_001114_140 Hb_003370_030--Hb_001114_140 Hb_003370_030--Hb_005000_260 Hb_001266_100 Hb_001266_100 Hb_003370_030--Hb_001266_100 Hb_003370_030--Hb_003464_090 Hb_007765_110--Hb_003464_090 Hb_000868_090 Hb_000868_090 Hb_007765_110--Hb_000868_090 Hb_007765_110--Hb_003370_030 Hb_007765_110--Hb_011491_010 Hb_003849_110 Hb_003849_110 Hb_003464_090--Hb_003849_110 Hb_001359_050 Hb_001359_050 Hb_003464_090--Hb_001359_050 Hb_001408_140 Hb_001408_140 Hb_003464_090--Hb_001408_140 Hb_005653_090 Hb_005653_090 Hb_003464_090--Hb_005653_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.34754 4.39247 1.84272 2.26604 2.10801 2.32607
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.17357 2.75299 3.07062 3.29912 1.81594

CAGE analysis